Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17710 311 / 9e-107 AtPEPC1 Arabidopsis thaliana phosphoethanolamine/phosphocholine phosphatase 1, Pyridoxal phosphate phosphatase-related protein (.1.2) AT1G73010 301 / 1e-102 AtPPsPase1, ATPS2 pyrophosphate-specific phosphatase1, phosphate starvation-induced gene 2 (.1) AT4G29530 287 / 1e-97 Pyridoxal phosphate phosphatase-related protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G196800 [exp] 338 / 2e-117 AT1G73010 397 / 2e-140 pyrophosphate-specific phosphatase1, phosphate starvation-induced gene 2 (.1) Potri.003G034600 [exp] 323 / 2e-111 AT1G17710 399 / 1e-141 Arabidopsis thaliana phosphoethanolamine/phosphocholine phosphatase 1, Pyridoxal phosphate phosphatase-related protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001479 [exp] 315 / 4e-108 AT1G17710 381 / 1e-134 Arabidopsis thaliana phosphoethanolamine/phosphocholine phosphatase 1, Pyridoxal phosphate phosphatase-related protein (.1.2) Lus10008479 [exp] 311 / 1e-106 AT1G17710 378 / 3e-133 Arabidopsis thaliana phosphoethanolamine/phosphocholine phosphatase 1, Pyridoxal phosphate phosphatase-related protein (.1.2) Lus10037650 [exp] 306 / 2e-104 AT1G17710 359 / 1e-125 Arabidopsis thaliana phosphoethanolamine/phosphocholine phosphatase 1, Pyridoxal phosphate phosphatase-related protein (.1.2) Lus10015632 [exp] 298 / 2e-101 AT1G17710 372 / 1e-130 Arabidopsis thaliana phosphoethanolamine/phosphocholine phosphatase 1, Pyridoxal phosphate phosphatase-related protein (.1.2) Lus10015634 [exp] 269 / 1e-90 AT1G17710 301 / 2e-103 Arabidopsis thaliana phosphoethanolamine/phosphocholine phosphatase 1, Pyridoxal phosphate phosphatase-related protein (.1.2) Lus10008573 [exp] 244 / 5e-81 AT4G29530 285 / 5e-98 Pyridoxal phosphate phosphatase-related protein (.1) Lus10037652 [exp] 210 / 2e-67 AT1G17710 255 / 2e-85 Arabidopsis thaliana phosphoethanolamine/phosphocholine phosphatase 1, Pyridoxal phosphate phosphatase-related protein (.1.2) Lus10032691 [exp] 65 / 1e-11 AT5G53770 479 / 3e-164 Nucleotidyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [poplar] [flax] HAD PF06888 [poplar] [flax] Put_Phosphatase Putative Phosphatase
Representative CDS sequence Show only first row Show all	>Potri.018G054800.1 pacid=42801934 polypeptide=Potri.018G054800.1.p locus=Potri.018G054800 ID=Potri.018G054800.1.v4.1 annot-version=v4.1 ATGCTGGGCATCGGAGGAAGTGCGATGGCAAAAGTGGTTGTGGTTTTCGACTTCGACAAGACCATTATTGACTGTGATAGTGATAATTGGGTCGTCGAAA AGCTAGATGTCCACGACTTGTTCGCTCAGCTCCTTCCTTCCTTGCCTTGGAACCGTCTCATGGATAAGATGATGATGGAGCTTCACTCCCGAGGGAAGAC AATTCAGGATATTGCAGAGTGCTTGAAAAAGGTCCCATTAAATCCCAGGATGATCTCTGCAATTAAATCAGCCTATGCTTCTGGGTGTGACTTAAGGATA GTAAGCGATTCAAATTACTTCTTTATCGAGACAGTCTTGAAACATAATGGGCTGATGGATTGCTTCTCCGAGATCAACACAAACCCGAGCTATGTTGATG GAGAAGGAAGGCTTAGAATCTTACAGTACCATGATGTTAATAAGTTCCCTTCTCATGGGTGCACCAGCTGCCCTCCCAACATGTGCAAGGGTCTGGTGAT GAAAAGGATCCAAGCTTCTGTTTCGGCCGAGGGAGAAAAACAGTTCATCTATGTTGGTGATGGAAAAAATGATTTCTGCCCAGCTTTGACTCTTAAAGAA ACAGATGCGTTGATGCCAAGGAAGAACTTTCCACTGTGGGAGCTCATTTGCAACAACAAAATGCTTGTCGAGGCAAATATTCAGGAATGGAGTGATTGGG AGGAGCTTGAGAGTAAGTTGCATAATTTAACGAATACAATCTTTATTGAAGAGAAATGCAGTGTAAGAGCAGATCAATTGGTTCCAGTTGATTGCAAGTT TCAAACGAGTTCAATTTCTGCACCTGATGCTGTTAACAGAAACGTCCTTCCAGTTCCTCAGTAG
AA sequence Show only first row Show all	>Potri.018G054800.1 pacid=42801934 polypeptide=Potri.018G054800.1.p locus=Potri.018G054800 ID=Potri.018G054800.1.v4.1 annot-version=v4.1 MLGIGGSAMAKVVVVFDFDKTIIDCDSDNWVVEKLDVHDLFAQLLPSLPWNRLMDKMMMELHSRGKTIQDIAECLKKVPLNPRMISAIKSAYASGCDLRI VSDSNYFFIETVLKHNGLMDCFSEINTNPSYVDGEGRLRILQYHDVNKFPSHGCTSCPPNMCKGLVMKRIQASVSAEGEKQFIYVGDGKNDFCPALTLKE TDALMPRKNFPLWELICNNKMLVEANIQEWSDWEELESKLHNLTNTIFIEEKCSVRADQLVPVDCKFQTSSISAPDAVNRNVLPVPQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G17710		AtPEPC1	Arabidopsis thaliana phosphoet...		Potri.018G054800 [exp]	0	1
AT5G51810		AT2353, GA20OX2...	gibberellin 20 oxidase 2 (.1)		Potri.012G132400 [exp]	3.74	0.8362	Pt-GA20.1,GA20ox6
AT4G33040			Thioredoxin superfamily protei...		Potri.006G226900 [exp]	6.92	0.7989
AT5G66815			unknown protein		Potri.014G034500 [exp]	8.12	0.7946
AT4G21760		BGLU47	beta-glucosidase 47 (.1)		Potri.004G019800 [exp]	8.94	0.7616
AT3G21420		LBO1	LATERAL BRANCHING OXIDOREDUCTA...		Potri.010G023600 [exp]	11.74	0.7588
AT4G32810		MAX4, CCD8, ATC...	MORE AXILLARY BRANCHING 4, car...		Potri.018G044100 [exp]	12.16	0.7642
AT3G21420		LBO1	LATERAL BRANCHING OXIDOREDUCTA...		Potri.010G023550 [exp]	13.22	0.7554
AT1G63440		HMA5	heavy metal atpase 5 (.1)		Potri.001G105800 [exp]	14.49	0.7472
AT5G41460			Protein of unknown function (D...		Potri.015G106101 [exp]	16.15	0.7484
AT1G69580	GARP		Homeodomain-like superfamily p...		Potri.008G087600 [exp]	16.97	0.7221

Compare expression of checked genes

Potri.018G054800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.