Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11790 516 / 0 NDL2 N-MYC downregulated-like 2 (.1) AT5G56750 515 / 0 NDL1 N-MYC downregulated-like 1 (.1) AT2G19620 488 / 1e-174 NDL3 N-MYC downregulated-like 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G230800 [exp] 626 / 0 AT5G56750 524 / 0.0 N-MYC downregulated-like 1 (.1) Potri.018G067700 [exp] 535 / 0 AT5G56750 552 / 0.0 N-MYC downregulated-like 1 (.1) Potri.013G038100 [exp] 447 / 3e-158 AT5G56750 462 / 6e-164 N-MYC downregulated-like 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026433 [exp] 464 / 1e-165 AT5G56750 456 / 2e-162 N-MYC downregulated-like 1 (.1) Lus10001786 [exp] 431 / 9e-152 AT5G56750 465 / 4e-165 N-MYC downregulated-like 1 (.1) Lus10020241 [exp] 395 / 2e-137 AT5G56750 431 / 1e-151 N-MYC downregulated-like 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF03096 [poplar] [flax] Ndr Ndr family
Representative CDS sequence Show only first row Show all	>Potri.018G054900.8 pacid=42801507 polypeptide=Potri.018G054900.8.p locus=Potri.018G054900 ID=Potri.018G054900.8.v4.1 annot-version=v4.1 ATGGGAGATTCAAGTGACTCGCTCTCCATAGATATGGAGACGCCTTCTCTTAGTGGAAAGGAGTATGTTATCGAAACTTGCTATGGTCATGTGTCTGTTT CTGTATATGGAGACCAAGACAAACCAGCTCTTGTTACTTATCCTGATTTAGCTCTAAATCATACCTCGTGTTTTCAAGGATTATTATTTTGTCCTGAAGC ATGCTCGTTGCTTCTTCACAACTTTTGCATATATCATATCAGTCCTCCTGGGCATGAGTTAGGAGCTGCAACAATTAGCCCTGATGACCCTTTGCTTTCT GTTGATGACTTGGCAGACCAAATTGCTGAGGTTCTTAACTATTTTGGACTTGATGCAGTGATGTGTATGGGGGTTACAGCTGGAGCTTACATTCTTACTC TATTTGCTATGAAATACAGGCAACGCGTCCTTGGCTTGATACTTATTTCTCCTCTATGCAATGCACCCTCTTGGACAGAATGGCTGTATAATAAGGTCTT GTCTAATTTACTATACTATTATGGAATGTGTGGAGTTGTGAAGGAATTATTGCTTAAGCGGTATTTCAGCAAGGAAGCTCTTGGTAGTTCTCAAGTACCA GAATCAGATGCAGTCCAGGCCTGCAAAAGATTGCTGGATGAAAGGCAGGGTTTAAATGTATGGCGATTTCTTGAAGCAATAAATGGGAGACAAGACATTA GTAATGGATTGAGAAAACTACTTTGTTGCTCACTAATATTTGTTGGCGAGAACTCTCCGTTTCATTTTGAGTCTCTTGACATGACCTCAGAACTAGACAG AAGATATAGTGCCTTAGTAGAGGTTCAGGCATGTGGGTCAATGGTGACAGAGGAGCAGCCTCATGCCATGTTAATACCAATGGAGTACTTTCTCACAGGA TACGGTATGTACAGGCCGCCAAAGTTAAGTGGTAGTCCAAGAAGTACTTTGAGTCCAATTTGCATTTCCCCGGAGCTCCTCTCACCGGAAAGCATGGGCT TGAAGTTAAAACCGATAAAAACACGAATATCTCTAGAAGTCTAA
AA sequence Show only first row Show all	>Potri.018G054900.8 pacid=42801507 polypeptide=Potri.018G054900.8.p locus=Potri.018G054900 ID=Potri.018G054900.8.v4.1 annot-version=v4.1 MGDSSDSLSIDMETPSLSGKEYVIETCYGHVSVSVYGDQDKPALVTYPDLALNHTSCFQGLLFCPEACSLLLHNFCIYHISPPGHELGAATISPDDPLLS VDDLADQIAEVLNYFGLDAVMCMGVTAGAYILTLFAMKYRQRVLGLILISPLCNAPSWTEWLYNKVLSNLLYYYGMCGVVKELLLKRYFSKEALGSSQVP ESDAVQACKRLLDERQGLNVWRFLEAINGRQDISNGLRKLLCCSLIFVGENSPFHFESLDMTSELDRRYSALVEVQACGSMVTEEQPHAMLIPMEYFLTG YGMYRPPKLSGSPRSTLSPICISPELLSPESMGLKLKPIKTRISLEV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G11790		NDL2	N-MYC downregulated-like 2 (.1...		Potri.018G054900 [exp]	0	1
AT3G15470			Transducin/WD40 repeat-like su...		Potri.011G122500 [exp]	3.00	0.7485
AT3G52115		AtCOM1, ATGR1	gamma response gene 1 (.1)		Potri.001G269700 [exp]	5.29	0.6905	Pt-GR1.2
AT1G50300		TAF15	TBP-associated factor 15 (.1)		Potri.010G170700 [exp]	11.74	0.7182
AT5G03250			Phototropic-responsive NPH3 fa...		Potri.008G038600 [exp]	20.29	0.7042
AT2G40730		CTEXP	cytoplasmic tRNA export protei...		Potri.019G059200 [exp]	21.49	0.6520
AT1G65950			Protein kinase superfamily pro...		Potri.004G075100 [exp]	24.31	0.7150
AT1G52320			unknown protein		Potri.003G054800 [exp]	29.66	0.6135
AT2G26000		BRIZ2	BRAP2 RING ZnF UBP domain-cont...		Potri.005G110500 [exp]	31.17	0.6080
AT1G23540		IGI1, AtPERK12	proline-rich extensin-like rec...		Potri.008G189700 [exp]	31.81	0.6408
					Potri.010G148450 [exp]	32.46	0.6421

Compare expression of checked genes

Potri.018G054900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.