Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17720 824 / 0 ATBBETA, ATB BETA Protein phosphatase 2A, regulatory subunit PR55 (.1.2) AT1G51690 788 / 0 ATB ALPHA, ATBALPHA protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G231000 [exp] 974 / 0 AT1G17720 831 / 0.0 Protein phosphatase 2A, regulatory subunit PR55 (.1.2) Potri.001G197300 [exp] 830 / 0 AT1G17720 861 / 0.0 Protein phosphatase 2A, regulatory subunit PR55 (.1.2) Potri.003G034300 [exp] 816 / 0 AT1G17720 840 / 0.0 Protein phosphatase 2A, regulatory subunit PR55 (.1.2) Potri.015G079300 [exp] 572 / 0 AT1G17720 547 / 0.0 Protein phosphatase 2A, regulatory subunit PR55 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015635 [exp] 856 / 0 AT1G17720 878 / 0.0 Protein phosphatase 2A, regulatory subunit PR55 (.1.2) Lus10037653 [exp] 855 / 0 AT1G17720 879 / 0.0 Protein phosphatase 2A, regulatory subunit PR55 (.1.2) Lus10012083 [exp] 659 / 0 AT1G17720 669 / 0.0 Protein phosphatase 2A, regulatory subunit PR55 (.1.2) Lus10001239 [exp] 541 / 0 AT1G17720 576 / 0.0 Protein phosphatase 2A, regulatory subunit PR55 (.1.2) Lus10042101 [exp] 538 / 0 AT1G17720 570 / 0.0 Protein phosphatase 2A, regulatory subunit PR55 (.1.2) Lus10007401 [exp] 455 / 1e-156 AT1G51690 460 / 7e-159 protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.018G055001.1 pacid=42800547 polypeptide=Potri.018G055001.1.p locus=Potri.018G055001 ID=Potri.018G055001.1.v4.1 annot-version=v4.1 ATGAACGGAGGCGGCAGTGAGGAAGCTGCGGAGGCGGTGGCGGCAGCGCCGGTGCCGCTTGAGTGGAAATTTGCCCAGGTTTTTGGAGAGCGAACGGCTG GTGAAGAAGTACAGGAAGTCGATATCATATCTGCCATCGAATTTGATAGAACTGGTGACCATCTTGCTACTGGAGATCGTGGAGGTCGAGTGGTTTTATT TGAAAGAACCGACAAGAGAGATCATGGTGGAAATCGGAGAGATCTAGAGAGGATGGATTTTCCAATTATCAGGCATCCTGAATTCCGTTACAAAACAGAG TTTCAGAGCCATGAACCTGAGTTTGATTATCTGAAGAGCTTGGAAATTGAGGAGAAGATCAACAAGATTAGATGGTGCCAAGCAGCTAATGGTGCACTTT TTCTTCTGTCCACTAATGACAAAACAATCAAATTTTGGAAGGTCCATGAAAAGAAGGTCAAGAAAATATGTGACATGAATGTTGACCCTGCAAAAGCTGC TGGAAATGGTCCTGTTGTAGGTCCAAGCATACCAACAAGCTCCAAACCATATACTGCCAATGGAGGATGTTTGGATAAACCCTTGGGCTTGAGTAATGAC TTTTCTTTCCCACTTGGGGGTGTCCCGTCTCTACACTTACCTGTGGTATTGACCAGTAGTGAAATCAGCCTTGTGCCTAGGTGTCGGAGAATATATGCTC ATGCCCATGACTATCACATTAACTCCATTTCTAACAACAGTGATGGTGAAACTTTTATATCTGCTGACGATCTGCGAATAAATCTTTGGAATTTGGAAAT CAGCAATCAGAGTTTCAATATTGTTGATGTAAAGCCTGCAAACATGGAGGATCTGACTGAGGTGATAACTTCAGCAGAATTTCATCCTACTCATTGCAAT ATTCTGGCATATAGTAGTTCAAGGGGCTCAATTCGTTTAGTTGACATGCGACAGTCAGCTCTATGCGATTCTCATAGCAAATTGTTTGAGGAACAAGAGG TGCCTGGTTCAAGGTCCTTCTTCACAGAGATAATTGCCTCAATCTCAGATATTAAGTTTGCCAAGGATGGGAGATATATTCTTAGTCGTGATTACATGAC TCTAAAGTTGTGGGACATAAATATGGATTCTGGACCAGTTTCAACCTTCCAAGTTCATGAAAATCTTAGACCTAAGCTTTGTGATCTGTATGAAAACGAT TCCATCTTTGACAAATTTGAGTGTTGTCTGAGTGGAGATGGACTTCGAGTGGCAACTGGTTCATACAGCAACCTATTTCGTGTGTTTGGTTGTTCTGAAG GAAGCACAGAAGCAACAACATTGGAAGCCAGCAAGAATCCAATGAGGAAACAGGTTCAAACCCCGTCAAGGCCTTCTAGATCTCTGGGCACTCTTTCCCA TGGTTTTAGGCGAGGAGCTGATACGTCCGGAGTTGATACAAATGGAAATGCATTTGATTTCACAACGAAGTTGTTGCATCTAGCGTGGCATCCAACTGAA AACTCCCTTGCCTGTGCTGCTTCAAACAGCCTTTACATGTATTATGCATGA
AA sequence Show only first row Show all	>Potri.018G055001.1 pacid=42800547 polypeptide=Potri.018G055001.1.p locus=Potri.018G055001 ID=Potri.018G055001.1.v4.1 annot-version=v4.1 MNGGGSEEAAEAVAAAPVPLEWKFAQVFGERTAGEEVQEVDIISAIEFDRTGDHLATGDRGGRVVLFERTDKRDHGGNRRDLERMDFPIIRHPEFRYKTE FQSHEPEFDYLKSLEIEEKINKIRWCQAANGALFLLSTNDKTIKFWKVHEKKVKKICDMNVDPAKAAGNGPVVGPSIPTSSKPYTANGGCLDKPLGLSND FSFPLGGVPSLHLPVVLTSSEISLVPRCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCN ILAYSSSRGSIRLVDMRQSALCDSHSKLFEEQEVPGSRSFFTEIIASISDIKFAKDGRYILSRDYMTLKLWDINMDSGPVSTFQVHENLRPKLCDLYEND SIFDKFECCLSGDGLRVATGSYSNLFRVFGCSEGSTEATTLEASKNPMRKQVQTPSRPSRSLGTLSHGFRRGADTSGVDTNGNAFDFTTKLLHLAWHPTE NSLACAASNSLYMYYA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G17720		ATBBETA, ATB BE...	Protein phosphatase 2A, regula...		Potri.018G055001 [exp]	0	1
AT1G54920			unknown protein		Potri.013G023600 [exp]	4.47	0.8799
AT3G24530			AAA-type ATPase family protein...		Potri.018G081000 [exp]	5.91	0.9004
AT2G38650		GAUT7, LGT7	LIKE GLYCOSYL TRANSFERASE 7, g...		Potri.016G143966 [exp]	7.48	0.8622
AT5G56510		APUM12	pumilio 12 (.1)		Potri.003G222300 [exp]	8.24	0.8885
AT1G79830		GC5	golgin candidate 5 (.1.2.3.4)		Potri.003G052100 [exp]	10.09	0.8880
AT2G19950		GC1	golgin candidate 1 (.1.2)		Potri.018G086600 [exp]	13.85	0.8811
AT4G39050			Kinesin motor family protein (...		Potri.009G122100 [exp]	16.43	0.8755
AT1G01950		AtKINUb, ARK2	Arabidopsis thaliana KINESIN U...		Potri.002G149400 [exp]	19.39	0.8356
AT2G01600			ENTH/ANTH/VHS superfamily prot...		Potri.006G075800 [exp]	20.44	0.8488
AT4G34450			coatomer gamma-2 subunit, puta...		Potri.009G115100 [exp]	21.07	0.8656

Compare expression of checked genes

Potri.018G055001 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.