Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G25970 321 / 2e-100 KH domain-containing protein (.1) AT1G33680 177 / 1e-46 KH domain-containing protein (.1) AT4G10070 176 / 1e-46 KH domain-containing protein (.1) AT5G04430 72 / 2e-13 BTR1S, BTR1L, BTR1 BINDING TO TOMV RNA 1S \(SHORT FORM\), binding to TOMV RNA 1L (long form) (.1), binding to TOMV RNA 1L (long form) (.2) AT1G14170 55 / 1e-07 RNA-binding KH domain-containing protein (.1.2.3) AT5G15270 55 / 2e-07 RNA-binding KH domain-containing protein (.1.2) AT3G04610 52 / 1e-06 FLK flowering locus KH domain, RNA-binding KH domain-containing protein (.1) AT5G06770 50 / 2e-06 C3HZnF KH domain-containing protein / zinc finger (CCCH type) family protein (.1) AT5G50940 49 / 4e-06 RNA-binding KH domain-containing protein (.1) AT5G64390 49 / 1e-05 HEN4 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G231800 [exp] 727 / 0 AT2G25970 393 / 5e-128 KH domain-containing protein (.1) Potri.013G099800 [exp] 186 / 8e-50 AT4G10070 303 / 5e-92 KH domain-containing protein (.1) Potri.019G072500 [exp] 181 / 5e-48 AT4G10070 370 / 2e-117 KH domain-containing protein (.1) Potri.010G230500 [exp] 71 / 6e-13 AT5G04430 405 / 9e-143 BINDING TO TOMV RNA 1S \(SHORT FORM\), binding to TOMV RNA 1L (long form) (.1), binding to TOMV RNA 1L (long form) (.2) Potri.017G042500 [exp] 72 / 1e-12 AT5G64390 345 / 1e-106 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3) Potri.008G030700 [exp] 69 / 3e-12 AT5G04430 406 / 1e-142 BINDING TO TOMV RNA 1S \(SHORT FORM\), binding to TOMV RNA 1L (long form) (.1), binding to TOMV RNA 1L (long form) (.2) Potri.017G085500 [exp] 62 / 1e-09 AT5G15270 592 / 0.0 RNA-binding KH domain-containing protein (.1.2) Potri.004G123400 [exp] 61 / 2e-09 AT5G15270 596 / 0.0 RNA-binding KH domain-containing protein (.1.2) Potri.008G088600 [exp] 61 / 3e-09 AT5G15270 454 / 5e-155 RNA-binding KH domain-containing protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004445 [exp] 335 / 2e-109 AT2G25970 309 / 3e-100 KH domain-containing protein (.1) Lus10013531 [exp] 283 / 3e-86 AT2G25970 325 / 4e-103 KH domain-containing protein (.1) Lus10020998 [exp] 234 / 7e-69 AT2G25970 253 / 2e-76 KH domain-containing protein (.1) Lus10023854 [exp] 234 / 1e-68 AT2G25970 245 / 1e-73 KH domain-containing protein (.1) Lus10002947 [exp] 189 / 1e-50 AT4G10070 426 / 1e-138 KH domain-containing protein (.1) Lus10003519 [exp] 178 / 7e-47 AT4G10070 399 / 4e-128 KH domain-containing protein (.1) Lus10033557 [exp] 74 / 8e-14 AT5G15270 201 / 3e-59 RNA-binding KH domain-containing protein (.1.2) Lus10038665 [exp] 73 / 2e-13 AT5G04430 447 / 2e-159 BINDING TO TOMV RNA 1S \(SHORT FORM\), binding to TOMV RNA 1L (long form) (.1), binding to TOMV RNA 1L (long form) (.2) Lus10004446 [exp] 72 / 3e-13 AT2G25970 80 / 3e-16 KH domain-containing protein (.1) Lus10037932 [exp] 72 / 3e-13 AT5G04430 449 / 4e-160 BINDING TO TOMV RNA 1S \(SHORT FORM\), binding to TOMV RNA 1L (long form) (.1), binding to TOMV RNA 1L (long form) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0007 [poplar] [flax] KH PF00013 [poplar] [flax] KH_1 KH domain
Representative CDS sequence Show only first row Show all	>Potri.018G055300.1 pacid=42801554 polypeptide=Potri.018G055300.1.p locus=Potri.018G055300 ID=Potri.018G055300.1.v4.1 annot-version=v4.1 ATGGCAGACGAATCTACATACTCGACAGCCACAGACACCACACCACCATCGTCCAATAAACGCAAATTCGATGACCAATCAGCACCGCCTCCCTCAACTC GGAGGCAAACAGGATTCTCATCTCCGATTTCCGATCCCGCTCCACCACCATCTTACAACAGCGTGCCGCCCCCTGTTGACGAGATCCAGATGGCCAAACA GAAAGCTCAGGAGATCGCCGCTCGTATAATGAGTGGTGCCGGTGCTGATATTAAGCGACCTAGGGCTGAAAACGGTGCGAGTGGGTTTGACTCTGTTGAG AGTAATAAGGGATTTAGCTCTGCTCCTCCAGATATGAAGTCTACCATATCAAACTCAGCCCCTTCGTCAATTCCGGCTTCATATGGCTCATACCCGGGTG GTTCTGGTTTGAGTAAAAAAATTGATGTTCCACAAGGCAGGGTTGGTGTTATCATTGGAAAAGGTGGAGAGACTATCAAATATCTTCAGCTTCAGTCTGG AGCAAAAATTCAGGTCACTCGAGACATGGATGCTGATCCCAACTCCCCATATAGGATTGTTGAGCTTATGGGTACACCTGAACAAATTGCCAAGGCAGAA CAGTTGATTAATGATGTCCTTGCAGAGGCTGATGCAGGGGGTTCTGGTACAATTTCCCGAAGGTATGCAGGACAAGGTGGTTCTGAACATTTTTCAATGA AGATTCCCAATAACAAGGTTGGTCTGGTCATTGGCAAAGGTGGTGATTCTATTAAGAACATGCAAGCTAGGTCTGGAGCCCGTATTCAGGTTATACCTTT GCATCTGCCCCCAGGTGATACATCTACAGAAAGGACAGTTCACATAGAGGGGACAAGTGAACAAGTTGAGGCTGCAAAACAGTTGGTTAATGAAGTCACC AGTGAGAATCGAATGAGGAATCCAAACATGGGTGGAGGTTATCCTCAGCAAGGATATCAAGCACGACCACCTACAAGTTGGGGTCCATCGTCTGGTCCAC CAATGCAACAAGCTGGTTATGGCTACATGCAGGCTGGAGCATACCCTGGTGCATCAGCACAGTATAATACGTCTCAGCCAGCTTATCCAGGCTATCCTCC ACAACAACCATCTGGTGGATACCCCCCTAACTGGGACCAGTCATCTGTCTCGGCAAATCAGCAAAATCAGGGTTATGATTACTATAGTCAGCCACCTACA TCCCAGCAGCAAACTTCTGGTGGTGCTGCAGCTCCAGCAGATGGCACTGGTTATAATTACAGTCAGGCACCAGCTTCTGGCTATAACCAACAAGGGCAGG GTTATAGCCAAGATGGCTATGGTGGGTATCAGCAGCCTGGGTATGGTCAGCCACCACCTTACGATCAACAGCAAGGTTATACTTCTGCTCCTAGCTACAG CAATGTGGCCAACCCAGCTCAAGAAGGACATGCTCCTTCATATGGAGCTCAAGGAGATTCAGCTCAAGGGTCATCTCAGCCATCTGCAATGGGGCAGCAA GGTTATTCTACTGGCCAGCAGCCTAGCCCAAACCCAGCAAGTTATCCACCTCAGGGAGCTGCTCAGCCTGGTTATGGGTTGCCCCCATCTTCCCAATCTG GCTATGGGAGTCAACCAGCTGCACAATATGGGAGCTATGGAGCACCTCAATCACAGAAACCTCCAGCCAATCCACCTGTTTATGGGCAGAGCCAACAGTC ACCCACCACCCCTGGAAGCTATGGCCAGCCTACTGGACAGCCAGGATATCCACACTCCCAGCCACTTCCATCTGGCTATGCGCAACCAGATTCAGGTTCC CAGAGTGCTCCACCATCGAGTTATGGTGCCGCAGGTGCTCAGCCAGGGTATGCTCCTCCCTATGGTGTCCCACCAGCTGGCCAACCAGGTTATGGACAGG GGCCTCCCCCCTACAGCGGCACCTCTTATGGTAGTGGTTACTCTCAGCCTGCTGCATATTCTGCTGACAGCAACGCAACTAACAATGGTCGTGGGACATA TGAATCAGCACCAGCATCACAGACCGCCCAACAGAGTGGAGTTGCTAAAGCATCACCTCAAAGTTGA
AA sequence Show only first row Show all	>Potri.018G055300.1 pacid=42801554 polypeptide=Potri.018G055300.1.p locus=Potri.018G055300 ID=Potri.018G055300.1.v4.1 annot-version=v4.1 MADESTYSTATDTTPPSSNKRKFDDQSAPPPSTRRQTGFSSPISDPAPPPSYNSVPPPVDEIQMAKQKAQEIAARIMSGAGADIKRPRAENGASGFDSVE SNKGFSSAPPDMKSTISNSAPSSIPASYGSYPGGSGLSKKIDVPQGRVGVIIGKGGETIKYLQLQSGAKIQVTRDMDADPNSPYRIVELMGTPEQIAKAE QLINDVLAEADAGGSGTISRRYAGQGGSEHFSMKIPNNKVGLVIGKGGDSIKNMQARSGARIQVIPLHLPPGDTSTERTVHIEGTSEQVEAAKQLVNEVT SENRMRNPNMGGGYPQQGYQARPPTSWGPSSGPPMQQAGYGYMQAGAYPGASAQYNTSQPAYPGYPPQQPSGGYPPNWDQSSVSANQQNQGYDYYSQPPT SQQQTSGGAAAPADGTGYNYSQAPASGYNQQGQGYSQDGYGGYQQPGYGQPPPYDQQQGYTSAPSYSNVANPAQEGHAPSYGAQGDSAQGSSQPSAMGQQ GYSTGQQPSPNPASYPPQGAAQPGYGLPPSSQSGYGSQPAAQYGSYGAPQSQKPPANPPVYGQSQQSPTTPGSYGQPTGQPGYPHSQPLPSGYAQPDSGS QSAPPSSYGAAGAQPGYAPPYGVPPAGQPGYGQGPPPYSGTSYGSGYSQPAAYSADSNATNNGRGTYESAPASQTAQQSGVAKASPQS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G25970			KH domain-containing protein (...		Potri.018G055300 [exp]	0	1
AT2G34357			ARM repeat superfamily protein...		Potri.006G137900 [exp]	5.00	0.7512
AT1G03190		ATXPD, UVH6	ULTRAVIOLET HYPERSENSITIVE 6, ...		Potri.002G054000 [exp]	10.19	0.6417	Pt-UVH6.1
AT1G77320		MEI1	meiosis defective 1, transcrip...		Potri.005G182500 [exp]	10.58	0.6692
AT1G47490		ATRBP47C	RNA-binding protein 47C (.1.2)		Potri.014G034600 [exp]	12.08	0.6889
AT4G11420		ATTIF3A1, ATEIF...	eukaryotic translation initiat...		Potri.005G021400 [exp]	16.73	0.6661
AT1G42440			unknown protein		Potri.005G250100 [exp]	17.32	0.6707
AT1G48920		ATNUC-L1, PARL1	PARALLEL 1, nucleolin like 1 (...		Potri.005G093100 [exp]	29.79	0.6652
AT4G02400			U3 ribonucleoprotein (Utp) fam...		Potri.002G203700 [exp]	31.41	0.6503
AT3G53940			Mitochondrial substrate carrie...		Potri.016G103300 [exp]	34.11	0.6289
AT1G15200			protein-protein interaction re...		Potri.003G021900 [exp]	36.08	0.5974

Compare expression of checked genes

Potri.018G055300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.