Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G25950 367 / 3e-131 Protein of unknown function (DUF1000) (.1) AT3G04780 53 / 1e-08 Protein of unknown function (DUF1000) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G039500 [exp] 53 / 7e-09 AT3G04780 310 / 9e-110 Protein of unknown function (DUF1000) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007454 [exp] 358 / 2e-127 AT2G25950 341 / 2e-120 Protein of unknown function (DUF1000) (.1) Lus10000888 [exp] 189 / 2e-58 AT2G47010 320 / 7e-105 unknown protein Lus10024442 [exp] 137 / 3e-40 AT1G17030 231 / 4e-73 unknown protein Lus10001780 [exp] 55 / 2e-09 AT3G04780 295 / 8e-104 Protein of unknown function (DUF1000) (.1) Lus10020246 [exp] 54 / 2e-08 AT3G04780 265 / 7e-90 Protein of unknown function (DUF1000) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0202 [poplar] [flax] GBD PF06201 [poplar] [flax] PITH PITH domain
Representative CDS sequence Show only first row Show all	>Potri.018G056100.2 pacid=42801737 polypeptide=Potri.018G056100.2.p locus=Potri.018G056100 ID=Potri.018G056100.2.v4.1 annot-version=v4.1 ATGGCTTGTGTACACGATCATAGCTGTGAAGATCACGATTGCTCCTCTAACTGGTCTCTCTACAAACACATAGACCTCCCCAAGGTATCAGCTTTAAACG AGGCAGTTCCAGGAAGTGCTAAATCAGTTTTTAAAGCTTGGGAGCACCGTCTCGATTCTTCTGCGGGGCATTTGGAAAGCAACGAGGGTGATCCGGAGTT ACTTGTTTACATTCCATTCACATCGGATGTTAAGATCAAGAGCATTTCAATTGTTGGAGGTGCTGATGGAACAAGTCCCTCTAAGATGAGAGCGTTTATC AATCGAGATGGCATTGACTTCTCAGATGCTCAAAGTATGCAAGCTGTTCAGGAGTGGGATTTGGTTGAAAATTTGAATGGAGTACTTGAGTTTCAGACAA GATACGCCAAATTTCAAAGTGTGGCAAGCATCACATTGCATTTCCCTGATAATTTTGGTGGCGATACAAGTCAGATACACTATATTGGCTTCAAAGGTGA AGCCACCCAGTTGAAGAGGGATGTTGTTGCCACCATTGTTTATGAACTTATGCCCAACCCTTCTGACCACAAGACAAAGGCTGAAAGTGGTGGAGGTTAT TCACAGGTGGAATGA
AA sequence Show only first row Show all	>Potri.018G056100.2 pacid=42801737 polypeptide=Potri.018G056100.2.p locus=Potri.018G056100 ID=Potri.018G056100.2.v4.1 annot-version=v4.1 MACVHDHSCEDHDCSSNWSLYKHIDLPKVSALNEAVPGSAKSVFKAWEHRLDSSAGHLESNEGDPELLVYIPFTSDVKIKSISIVGGADGTSPSKMRAFI NRDGIDFSDAQSMQAVQEWDLVENLNGVLEFQTRYAKFQSVASITLHFPDNFGGDTSQIHYIGFKGEATQLKRDVVATIVYELMPNPSDHKTKAESGGGY SQVE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G25950			Protein of unknown function (D...		Potri.018G056100 [exp]	0	1
AT1G48440			B-cell receptor-associated 31-...		Potri.012G042700 [exp]	7.07	0.7181
AT1G75580			SAUR-like auxin-responsive pro...		Potri.002G024300 [exp]	13.78	0.6103
AT5G41340		ATUBC4, UBC4	ubiquitin conjugating enzyme 4...		Potri.001G101900 [exp]	31.14	0.5991	UBC4.4
AT1G05205			unknown protein		Potri.018G093501 [exp]	33.25	0.6032
AT5G61310			Cytochrome c oxidase subunit V...		Potri.014G120500 [exp]	39.11	0.6069
AT1G52740		HTA9	histone H2A protein 9 (.1)		Potri.018G032000 [exp]	54.47	0.5715
AT4G02080		ASAR1, ATSARA1C...	secretion-associated RAS super...		Potri.013G010000 [exp]	58.27	0.5866
AT4G17616			Pentatricopeptide repeat (PPR)...		Potri.003G084400 [exp]	73.45	0.5767
AT4G38800		ATMTN1, ATMTAN1	ARABIDOPSIS METHYLTHIOADENOSIN...		Potri.004G167200 [exp]	87.80	0.5645
AT5G35620		eIFiso4E, EIF(I...	LOSS OF SUSCEPTIBILITY TO POTY...		Potri.008G171100 [exp]	91.10	0.5316	Pt-EIF(ISO)4E.2

Compare expression of checked genes

Potri.018G056100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.