Plant FIBer expression Database

Potri.018G056500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G06005 514 / 0 FIP1 FRIGIDA interacting protein 1 (.1.2)
AT5G20580 472 / 5e-168 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10017167
[exp]
541 / 0 AT2G06005 496 / 1e-177 FRIGIDA interacting protein 1 (.1.2)
Lus10021558
[exp]
464 / 3e-163 AT2G06005 428 / 3e-149 FRIGIDA interacting protein 1 (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF14802 TMEM192 TMEM192 family
Representative CDS sequence
>Potri.018G056500.3 pacid=42802211 polypeptide=Potri.018G056500.3.p locus=Potri.018G056500 ID=Potri.018G056500.3.v4.1 annot-version=v4.1
ATGTCGACAGAGAGACATGGCAATTCCTCATCAACGTCTCGTGAAGAAAACGCTCTTTTCTTAGATATAGTGCAGGAGGCTCCTCTATTCGGTCACCGGA
AATCCAGGAGTATTTTTGGTGCTATCGTTTACTGTGCTCTACTGGCAGGTTATGCTGTTTTGGCAGCCGGAGCTCCATATATCTTTCGCCCTATAAAGCA
TTTGGTTCCGTCTTTGCTTTGCAGTTGTGATGTTGTTCTTCTTATACTCACAGGCATCTTTCAGCAATATTTCGTTTCTCAAGTTCAGAAAATACGGTTG
CAGGGTTATTACAGTTTTAGCCAGAAGTTGAAGCATATTGTTCGCTTACCATTTGCCATTACTGCGTATGGAACTGCTACTATGCTGCTTGTCATGGTAT
GGAAACCCCACATCAGTGTCCTTTCAGTCTCTACATTACTGAGGATTAACATGTTGGCTGAAGCAATATGTGCTGCATCATTTATGAGTGTCTATATTGG
TTACTTGCACCAGTACAATTCGTTAAACTCTGAACCTGACATTTTGAAGTCATTATATTCTCCACTTCAACATTCAAGTCCTTTAGAAGGTTTGAGGTAT
CATGATGGCAGTCGACTTTCTGATCAGCAAATGGCTTTGCTGCAATATCAGCGTGAGAACCTTCATTTCTTGAGTGAGGAGGTTCTTAGGTTGCAAGAGT
GCTTAAGCAAATATGAACGCTCTGATGATGGGAGTACACCTCAGGTTGATCTTGCCCATCTTTTAGCAGCTCGTGAACAGGAATTACGGACGCTTTCTGC
TGAGATGAATCAATTACAATCTGAGCTAAGGCTTGCTCGATCTTTGATAGCTGAGAGGGACTCTGAACTCCAGCAGGTGCGCACCACAAACAATCAGTAC
GTGGAAGAGAATGAAAGGCTGAGGGCTATTTTAGGGGAATGGAGTGCCAGGGCAGCTAAGCTTGAGCGAGCATTGGAAGGTGAGCGGATGTCAAATCTTG
AATTGCAAAAGAATTTTTCGACATCCAGAAATCAATCACATGTATCAACTGAAACAAGTGAGAAGCATTGA
AA sequence
>Potri.018G056500.3 pacid=42802211 polypeptide=Potri.018G056500.3.p locus=Potri.018G056500 ID=Potri.018G056500.3.v4.1 annot-version=v4.1
MSTERHGNSSSTSREENALFLDIVQEAPLFGHRKSRSIFGAIVYCALLAGYAVLAAGAPYIFRPIKHLVPSLLCSCDVVLLILTGIFQQYFVSQVQKIRL
QGYYSFSQKLKHIVRLPFAITAYGTATMLLVMVWKPHISVLSVSTLLRINMLAEAICAASFMSVYIGYLHQYNSLNSEPDILKSLYSPLQHSSPLEGLRY
HDGSRLSDQQMALLQYQRENLHFLSEEVLRLQECLSKYERSDDGSTPQVDLAHLLAAREQELRTLSAEMNQLQSELRLARSLIAERDSELQQVRTTNNQY
VEENERLRAILGEWSARAAKLERALEGERMSNLELQKNFSTSRNQSHVSTETSEKH

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G06005 FIP1 FRIGIDA interacting protein 1 ... Potri.018G056500
[exp]
0 1
AT1G80260 EMB1427 embryo defective 1427, Spc97 /... Potri.014G184701
[exp]
3.87 0.8457
AT3G55380 UBC14 ubiquitin-conjugating enzyme 1... Potri.008G053900
[exp]
4.00 0.8410 Pt-UBC7.1
AT2G40110 Yippee family putative zinc-bi... Potri.008G067100
[exp]
9.79 0.8230
AT2G04520 Nucleic acid-binding, OB-fold-... Potri.014G160900
[exp]
18.97 0.7742
AT4G17150 alpha/beta-Hydrolases superfam... Potri.016G001000
[exp]
22.44 0.7689
AT4G14600 Target SNARE coiled-coil domai... Potri.005G159600
[exp]
26.51 0.7707
AT2G33620 AT-hook AT hook motif DNA-binding fami... Potri.005G256500
[exp]
26.70 0.7655
AT5G19070 SNARE associated Golgi protein... Potri.008G202600
[exp]
27.71 0.7462
AT5G18940 Mo25 family protein (.1.2) Potri.008G198900
[exp]
30.38 0.7941
AT1G01230 ORMDL family protein (.1) Potri.002G174400
[exp]
33.70 0.7780

Potri.018G056500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.