Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16500 191 / 4e-59 AUX_IAA IAA26, PAP1 indole-3-acetic acid inducible 26, phytochrome-associated protein 1 (.1) AT1G51950 189 / 5e-58 AUX_IAA IAA18 indole-3-acetic acid inducible 18 (.1) AT5G25890 128 / 7e-36 AUX_IAA IAR2, IAA28 IAA-ALANINE RESISTANT 2, indole-3-acetic acid inducible 28 (.1) AT4G28640 116 / 1e-30 AUX_IAA IAA11 indole-3-acetic acid inducible 11 (.1.2.3) AT2G22670 109 / 2e-27 AUX_IAA IAA8 indoleacetic acid-induced protein 8 (.1.2.3.4) AT2G33310 106 / 1e-26 AUX_IAA IAA13 auxin-induced protein 13 (.1.2.3) AT4G29080 106 / 2e-26 AUX_IAA IAA27, PAP2 indole-3-acetic acid inducible 27, phytochrome-associated protein 2 (.1) AT1G04100 102 / 3e-25 AUX_IAA IAA10 indoleacetic acid-induced protein 10 (.1) AT1G04550 101 / 4e-25 AUX_IAA BDL, IAA12 indole-3-acetic acid inducible 12, BODENLOS, AUX/IAA transcriptional regulator family protein (.1.2) AT1G04250 100 / 8e-25 AUX_IAA IAA17, AXR3 indole-3-acetic acid inducible 17, AUXIN RESISTANT 3, AUX/IAA transcriptional regulator family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G236200 [exp] 482 / 2e-172 AT3G16500 184 / 3e-56 indole-3-acetic acid inducible 26, phytochrome-associated protein 1 (.1) Potri.001G190300 [exp] 247 / 6e-80 AT3G16500 235 / 3e-76 indole-3-acetic acid inducible 26, phytochrome-associated protein 1 (.1) Potri.003G048100 [exp] 240 / 4e-77 AT3G16500 224 / 4e-72 indole-3-acetic acid inducible 26, phytochrome-associated protein 1 (.1) Potri.010G065200 [exp] 116 / 7e-30 AT2G33310 243 / 4e-80 auxin-induced protein 13 (.1.2.3) Potri.002G256600 [exp] 112 / 2e-28 AT4G28640 191 / 6e-60 indole-3-acetic acid inducible 11 (.1.2.3) Potri.003G051300 [exp] 110 / 1e-27 AT4G29080 298 / 3e-100 indole-3-acetic acid inducible 27, phytochrome-associated protein 2 (.1) Potri.008G172400 [exp] 110 / 1e-27 AT2G33310 246 / 4e-81 auxin-induced protein 13 (.1.2.3) Potri.002G108000 [exp] 110 / 3e-27 AT5G65670 355 / 4e-122 indole-3-acetic acid inducible 9 (.1.2) Potri.010G078300 [exp] 107 / 1e-26 AT4G14550 319 / 1e-110 SOLITARY ROOT, indole-3-acetic acid inducible 14 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038285 [exp] 210 / 7e-66 AT3G16500 224 / 3e-72 indole-3-acetic acid inducible 26, phytochrome-associated protein 1 (.1) Lus10038284 [exp] 209 / 1e-64 AT3G16500 223 / 6e-71 indole-3-acetic acid inducible 26, phytochrome-associated protein 1 (.1) Lus10025817 [exp] 207 / 2e-64 AT3G16500 231 / 1e-74 indole-3-acetic acid inducible 26, phytochrome-associated protein 1 (.1) Lus10037587 [exp] 187 / 5e-57 AT3G16500 251 / 4e-83 indole-3-acetic acid inducible 26, phytochrome-associated protein 1 (.1) Lus10006842 [exp] 168 / 1e-49 AT3G16500 226 / 3e-73 indole-3-acetic acid inducible 26, phytochrome-associated protein 1 (.1) Lus10019241 [exp] 111 / 5e-28 AT5G65670 356 / 4e-123 indole-3-acetic acid inducible 9 (.1.2) Lus10034962 [exp] 110 / 7e-28 AT4G29080 289 / 4e-97 indole-3-acetic acid inducible 27, phytochrome-associated protein 2 (.1) Lus10024854 [exp] 106 / 2e-26 AT3G04730 221 / 3e-72 indoleacetic acid-induced protein 16 (.1) Lus10039414 [exp] 105 / 2e-26 AT4G14550 305 / 1e-105 SOLITARY ROOT, indole-3-acetic acid inducible 14 (.1) Lus10028222 [exp] 105 / 3e-26 AT5G65670 322 / 3e-110 indole-3-acetic acid inducible 9 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [poplar] [flax] Ubiquitin PF02309 [poplar] [flax] AUX_IAA AUX/IAA family
Representative CDS sequence Show only first row Show all	>Potri.018G057000.1 pacid=42801804 polypeptide=Potri.018G057000.1.p locus=Potri.018G057000 ID=Potri.018G057000.1.v4.1 annot-version=v4.1 ATGGAGGAATATATTCAGGGCTTCAATATGACATCTGAGAAAGAAGAATGGCATAAAAGCCACAAAGCATCAGAGGACAAAAAGCTAGAGTTGAGGCTTG GTCCTCCAGGAGAAATATCCCTTGTTTACAAGACCAATCCCACCACTCATGGAGCCAAAAGAGTACTTGAACACACAGTTGGAGCAAAACCATCAGAGGG ATACTGGTTTACAGATACAGATGAAAAGCAATACAAGAAGTTCTCAGGTTATGAGGAAGGAGCTGAGGAGGTATTCTCTTCTCCATGGTTAAGTAACCCC TTGCATTCTTCGACTTTTCACAGGGAGACCCAGAAGGAGTTACTGCAGCCTAAGCCTTCATTTCTCCAGTGCTCTAAAGTTGAAGAATTACAGTGCCCAG ATAAGATGGCATGTTCTACCTCTTCTAGTGTCCCATTTCCTGCTACCACAGCTGGGACCAATGGCTGTCATAAAAGAGCTGCACTTGCACCAGTAGTCGG GTGGCCTCCAATCCGGTCGTTTAGGAAAAACCTTGCAGGTAGCAGTACTCCAAAGCTGGTATCTGAGTCACGAAATAAACCTCCAAAAGAAGGGAGTAGC TTAAAACCTGACAGTTTCAGAAATGACTTGTTTGTAAAGATCAATATGGAAGGAGTCCCTATTGGAAGAAAAATAAACCTCAATGCCTATGACAGTTACG AGAAACTCTCTGTTGCCATAGATGAACTCTTCAGAGGTCTTCTTGCAGCTCGAAGAGAAACTGCTGATCCTAGGAATGACAAAAAGGTGAAAGAAGCAAA CGCAAATGCAGGTTCAGTTTCTGGAAGTGGGGAATATACTCTCGTTTATGAGGACAATGAAGGAGACAGGATTCTTGTTGGGGATGTTCCATGGCATATG TTTGTATCTACAGCAAAGAGATTGCGCGTACTGAAGAGCACTGAGATTTCCACTCCACAACTTTCAGTTGGTAACAACAAGCAAGAAAAGACACCACTTA GTCCTGCAGTAGAAATCGGAAGATGA
AA sequence Show only first row Show all	>Potri.018G057000.1 pacid=42801804 polypeptide=Potri.018G057000.1.p locus=Potri.018G057000 ID=Potri.018G057000.1.v4.1 annot-version=v4.1 MEEYIQGFNMTSEKEEWHKSHKASEDKKLELRLGPPGEISLVYKTNPTTHGAKRVLEHTVGAKPSEGYWFTDTDEKQYKKFSGYEEGAEEVFSSPWLSNP LHSSTFHRETQKELLQPKPSFLQCSKVEELQCPDKMACSTSSSVPFPATTAGTNGCHKRAALAPVVGWPPIRSFRKNLAGSSTPKLVSESRNKPPKEGSS LKPDSFRNDLFVKINMEGVPIGRKINLNAYDSYEKLSVAIDELFRGLLAARRETADPRNDKKVKEANANAGSVSGSGEYTLVYEDNEGDRILVGDVPWHM FVSTAKRLRVLKSTEISTPQLSVGNNKQEKTPLSPAVEIGR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G16500	AUX_IAA	IAA26, PAP1	indole-3-acetic acid inducible...		Potri.018G057000 [exp]	0	1
AT1G78940			Protein kinase protein with ad...		Potri.004G170901 [exp]	4.47	0.9337
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Potri.004G025001 [exp]	8.36	0.9072
AT3G18670			Ankyrin repeat family protein ...		Potri.011G016000 [exp]	13.41	0.9008
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Potri.004G026000 [exp]	15.87	0.8995
AT3G54340	MADS	AP3, ATAP3	APETALA 3, K-box region and MA...		Potri.002G028400 [exp]	21.07	0.9322	Pt-APETALA3.1
AT3G16500	AUX_IAA	IAA26, PAP1	indole-3-acetic acid inducible...		Potri.006G236200 [exp]	26.00	0.9316
AT1G24540		CYP86C1	"cytochrome P450, family 86, s...		Potri.010G050100 [exp]	27.45	0.9201	CYP86.1
AT1G77380		AAP3, ATAAP3	amino acid permease 3 (.1)		Potri.002G080066 [exp]	30.59	0.8606
AT1G22150		SULTR1;3	sulfate transporter 1;3 (.1)		Potri.005G167300 [exp]	30.85	0.9270
AT4G18250			receptor serine/threonine kina...		Potri.017G009600 [exp]	32.18	0.9193

Compare expression of checked genes

Potri.018G057000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.