Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G25850 921 / 0 PAPS2 poly(A) polymerase 2 (.1), poly(A) polymerase 2 (.2), poly(A) polymerase 2 (.3), poly(A) polymerase 2 (.4) AT4G32850 915 / 0 PAP(IV), PAP(IV), PAP(IV), PAP(IV), PAP(IV), PAP(IV), PAP(IV), nPAP, PAP(IV), PAP(IV), PAP(IV), PAP poly\(A\) polymerase IV, poly\(A\) polymerase IV, nuclear poly(a) polymerase AT1G17980 698 / 0 PAPS1 poly(A) polymerase 1 (.1), poly(A) polymerase 1 (.2) AT3G06560 287 / 1e-87 PAPS3 poly(A) polymerase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G235400 [exp] 1351 / 0 AT4G32850 909 / 0.0 poly\(A\) polymerase IV, poly\(A\) polymerase IV, nuclear poly(a) polymerase Potri.015G043200 [exp] 754 / 0 AT1G17980 871 / 0.0 poly(A) polymerase 1 (.1), poly(A) polymerase 1 (.2) Potri.008G102500 [exp] 296 / 2e-91 AT3G06560 573 / 0.0 poly(A) polymerase 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006029 [exp] 1035 / 0 AT4G32850 911 / 0.0 poly\(A\) polymerase IV, poly\(A\) polymerase IV, nuclear poly(a) polymerase Lus10005490 [exp] 851 / 0 AT4G32850 769 / 0.0 poly\(A\) polymerase IV, poly\(A\) polymerase IV, nuclear poly(a) polymerase Lus10006844 [exp] 811 / 0 AT4G32850 815 / 0.0 poly\(A\) polymerase IV, poly\(A\) polymerase IV, nuclear poly(a) polymerase Lus10037589 [exp] 807 / 0 AT2G25850 818 / 0.0 poly(A) polymerase 2 (.1), poly(A) polymerase 2 (.2), poly(A) polymerase 2 (.3), poly(A) polymerase 2 (.4) Lus10021643 [exp] 750 / 0 AT1G17980 867 / 0.0 poly(A) polymerase 1 (.1), poly(A) polymerase 1 (.2) Lus10034723 [exp] 738 / 0 AT1G17980 867 / 0.0 poly(A) polymerase 1 (.1), poly(A) polymerase 1 (.2) Lus10009011 [exp] 719 / 0 AT1G17980 857 / 0.0 poly(A) polymerase 1 (.1), poly(A) polymerase 1 (.2) Lus10009641 [exp] 693 / 0 AT1G17980 800 / 0.0 poly(A) polymerase 1 (.1), poly(A) polymerase 1 (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0260 [poplar] [flax] NTP_transf PF01909 [poplar] [flax] NTP_transf_2 Nucleotidyltransferase domain CL0260 [poplar] [flax] PF04926 [poplar] [flax] PAP_RNA-bind Poly(A) polymerase predicted RNA binding domain CL0260 [poplar] [flax] PF04928 [poplar] [flax] PAP_central Poly(A) polymerase central domain
Representative CDS sequence Show only first row Show all	>Potri.018G057200.1 pacid=42801725 polypeptide=Potri.018G057200.1.p locus=Potri.018G057200 ID=Potri.018G057200.1.v4.1 annot-version=v4.1 ATGGTGGGTTCTCAGAGTTCAAACGGTACGGCGGCGAAGAGGTACGGAATCACGAAACCCATATCCGTCGCGGGTCCCACTGAACCTGATCTCCATCGAA ATGCCGAATTAGAGAAGTTTTTGGTTGACTCGGGCTTAAACGAGAGCAAAGATGAAACTATTAAGAGAGAAGAGGTTCTAGGCCGTATCGATCAGATTGT GAAAGATTGGGTTAAGCAATTGACGCGTCAAAGGGGATATACTGATCAGATGGTAGAGGAAGCCAATGCTGTTATTTTTACTTTTGGGTCTTATCGTCTT GGGGTGCATGGTCCCGGGGCTGACATAGACACCCTGTGCGTTGGGCCTTCTTACGTGAATCGAGAGGAAGATTTCTTTATTACCTTGCATGATAAACTGG CTGAAACGGAAGAAGTTACTGAACTTCAGCCAGTTCCAGATGCTCATGTCCCGGTTATGAAGTTTAAATTCCAGGGAATATCAATTGATCTTCTTTATGC GAGTATATCCCTTTTGGTTGTTCCAGAAGACCTGGACATCTCCAATGGGTCTGTGCTCTATGAAGTTGATGAGCAAACTGTTCGAAGTCTAAATGGGTGC AGGGTTGCCGATCAAATTCTTAAACTTGTTCCAAATGTTGAGCACTTTCGGACAACACTCAGATGTCTGAAGTTCTGGGCTAAAAGGCGCGGTGTTTATT CAAATGTCACTGGTTTCCTTGGTGGAGTAAACTGGGCTCTTCTAGTTGCTCGAGTGTGCCAGCTTTATCCTAATGCAATTCCTAGTATGCTAGTCTCTCG GTTCTTCAGAGTCTATACACAATGGCGTTGGCCGAATCCTGTGATGCTATGCTCAATAGAAGAAGATGATCTTGGGTTTCCTGTATGGGATCCTCGCAAA AACCCTCGGGACCGGTTTCATCTTATGCCAATAATAACTCCTGCATATCCTTGCATGAATTCTAGCTATAATGTGTCTACAAGTACTCTTCGTGTTATGA CAGAGCAATTCCAAAGTGGTAACAGGATATGCGAGGAGATTGAACTGAACAAGGCACAGTGGAGTGCTCTTTTTGAGCCTTATCTTTTCTTTGAGGCATA CAAAAATTACCTACAAGTTGACATAGTTGCAGCTGTTGCTGCTGATTTGCTAGCGTGGAAAGGCTGGGTAGAGTCTCGGCTTAGACAACTTACCTTGAAG ATAGAGCGGGACACCAATGGGATGCTGCAGTGCCATCCTTATCCAAATGAGTATATAGATGCATCCAAGCAATGCCCACATTGTGCTTTCTTCATGGGCT TGCAGAGGAAAGAGGGAGTGACTGGTCAGGAGGGCCAGCAATTTGATATCCGGGGAACTGTTGATGAGTTTAGGCAAGAGATAAACATGTACATGTTTTG GAAACCAGGGATGGAAATATATGTCTCTCATGTTCGTAGAAGGCAGCTTCCAGGCTTTGTTTTCCCTGATGGGTACAAGCGATCTCGATCATCACGGCAT ATTAACCAGCACACTAGCAAAACTGGTGAAGATGTTGCAAGATCTCAGTCTGGGTCTGCTGAGAGACCTGTTAAGCGGAAAAATGATTGTGAAATGGAGG ATTTGAAGCCAGAGAAACAGGCTTGTTATAGCCCAGTAAGACCTCAGTCTGTTTCTCCTTCCAGTAGTGTTAGTAGGTCTGGTGTGACATCTCTGGCTAG TTCCTGGGAAGGTGTTAAATTAGGGTGTTCAACAATTAGGGACATTGGTAGCAACTGCAAGGATGTTGCTAGCAACTCTGAGGTTAGGTCATCTAGTGGG CAGTTGGAGAGTGAAAAAGATGGTTTGGGCGATTCCATGCAGCTTGGTGAAACTGTCTATCAGGATTCGCCATTAAATAGACAGATCTCTATGGATGTAC ATGATTCACCAATAGTTAGGAATGAGCTAGAACCAGCTAATCATATGAATGGAATAGAGCCAATGGAATCAATGGTTAATACAATTACAAAACAGGAGAT GCTCAGTCCACAGGAAATACCAAATTTTGAAACTGGGGAAAAACATGAGACTGGTGTAAATGACAAAATTGCAGGTTTGGGGTCAAACTTAATGGAGAAT GGATCTTCCAGAAAACTGTTAAATTGGGTAGCGGGCACTAGTCAAGCCATGGAGGTTGACCAAGAGCTTGTCAAACCATGTTGTCAGACAGCGGTTGTAG AATATGCTGAAAGCGTTATAAGGTCACATTCTGGCACTCAGAACCTCAACTGCGAGGGTAATGTATGTGCTGTGGATGCGGATGTGGTTCTGGAAAGTGG ATGTTTAAACATGAGCCGAGTGTTGCCAAAAGGCTTGCCAGAGGAATTAGAGCCGAAGACTGCAATTGGGAAAGTTGTAAATTCTCAAGACGGTGCTAGG TCAGAATCCTTGCAGAAGCCAATGATAAGGTTGAGTTTAAAGTCAACTGCATAA
AA sequence Show only first row Show all	>Potri.018G057200.1 pacid=42801725 polypeptide=Potri.018G057200.1.p locus=Potri.018G057200 ID=Potri.018G057200.1.v4.1 annot-version=v4.1 MVGSQSSNGTAAKRYGITKPISVAGPTEPDLHRNAELEKFLVDSGLNESKDETIKREEVLGRIDQIVKDWVKQLTRQRGYTDQMVEEANAVIFTFGSYRL GVHGPGADIDTLCVGPSYVNREEDFFITLHDKLAETEEVTELQPVPDAHVPVMKFKFQGISIDLLYASISLLVVPEDLDISNGSVLYEVDEQTVRSLNGC RVADQILKLVPNVEHFRTTLRCLKFWAKRRGVYSNVTGFLGGVNWALLVARVCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCSIEEDDLGFPVWDPRK NPRDRFHLMPIITPAYPCMNSSYNVSTSTLRVMTEQFQSGNRICEEIELNKAQWSALFEPYLFFEAYKNYLQVDIVAAVAADLLAWKGWVESRLRQLTLK IERDTNGMLQCHPYPNEYIDASKQCPHCAFFMGLQRKEGVTGQEGQQFDIRGTVDEFRQEINMYMFWKPGMEIYVSHVRRRQLPGFVFPDGYKRSRSSRH INQHTSKTGEDVARSQSGSAERPVKRKNDCEMEDLKPEKQACYSPVRPQSVSPSSSVSRSGVTSLASSWEGVKLGCSTIRDIGSNCKDVASNSEVRSSSG QLESEKDGLGDSMQLGETVYQDSPLNRQISMDVHDSPIVRNELEPANHMNGIEPMESMVNTITKQEMLSPQEIPNFETGEKHETGVNDKIAGLGSNLMEN GSSRKLLNWVAGTSQAMEVDQELVKPCCQTAVVEYAESVIRSHSGTQNLNCEGNVCAVDADVVLESGCLNMSRVLPKGLPEELEPKTAIGKVVNSQDGAR SESLQKPMIRLSLKSTA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G25850		PAPS2	poly(A) polymerase 2 (.1), pol...		Potri.018G057200 [exp]	0	1
AT3G53090		UPL7	ubiquitin-protein ligase 7 (.1...		Potri.016G096500 [exp]	1.00	0.8614
AT4G32440			Plant Tudor-like RNA-binding p...		Potri.001G173900 [exp]	2.00	0.8451
AT5G42400		SDG25, ATXR7	ARABIDOPSIS TRITHORAX-RELATED7...		Potri.002G001000 [exp]	2.44	0.8527
AT1G02890			AAA-type ATPase family protein...		Potri.002G205900 [exp]	6.92	0.8031
AT4G02480			AAA-type ATPase family protein...		Potri.012G096300 [exp]	6.92	0.7935
AT5G12430		TPR16	tetratricopeptide repeat 16, H...		Potri.009G050200 [exp]	9.89	0.8066
AT1G16540		ACI2, ABA3, SIR...	SIRTINOL RESISTANT 3, LOW OSMO...		Potri.007G066400 [exp]	11.83	0.8205	Pt-ABA3.1
AT5G60410		ATSIZ1, SIZ1	DNA-binding protein with MIZ/S...		Potri.004G210200 [exp]	13.74	0.7648
AT2G14170		ALDH6B2	aldehyde dehydrogenase 6B2 (....		Potri.009G078700 [exp]	16.73	0.7548
AT3G05090		LRS1	LATERAL ROOT STIMULATOR 1, Tra...		Potri.005G046500 [exp]	16.91	0.7551

Compare expression of checked genes

Potri.018G057200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.