Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G25870 701 / 0 haloacid dehalogenase-like hydrolase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G235301 [exp] 0 / 1 AT2G25870 0 / 1 haloacid dehalogenase-like hydrolase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006031 [exp] 731 / 0 AT2G25870 701 / 0.0 haloacid dehalogenase-like hydrolase family protein (.1) Lus10005489 [exp] 718 / 0 AT2G25870 689 / 0.0 haloacid dehalogenase-like hydrolase family protein (.1) Lus10038133 [exp] 682 / 0 AT2G25870 671 / 0.0 haloacid dehalogenase-like hydrolase family protein (.1) Lus10005169 [exp] 639 / 0 AT2G25870 614 / 0.0 haloacid dehalogenase-like hydrolase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0126 [poplar] [flax] Peptidase_MA PF02130 [poplar] [flax] UPF0054 Uncharacterized protein family UPF0054 CL0137 [poplar] [flax] HAD PF08282 [poplar] [flax] Hydrolase_3 haloacid dehalogenase-like hydrolase
Representative CDS sequence Show only first row Show all	>Potri.018G057500.2 pacid=42800699 polypeptide=Potri.018G057500.2.p locus=Potri.018G057500 ID=Potri.018G057500.2.v4.1 annot-version=v4.1 ATGCTCCCTCGCCTCTCTCCTCTCCTCCGCAACTCTTCAATGGCACGTGCCGTTCCACGCGCCTCCACCCCTCTCCCACTCCCTACTCTCTTACCGGCCA CAACTCTCTCTTCTCTCCACTCTCCTTCGAGTCTTTCATTCGCTCCAAAACCCAGCAATTTTAACTTCCTTTTGTTAACTAATACTGGACTCTTTAATAA AAAGTTCGAAACTTTTTCTCAAGAAAATTATAGGTGCACGGTTTGGGCCTCCCATAGAGGTTACCGGAAAGTCAGACAGCGGCCGGCGGCGGCGAGGAGG AGTAAAGAGAAGGATTTGGAGCTCAGTGTTAGCATTTGCATTGAAGAAGGCCTCCCTAATGACCCTGAAATATTGAGTATAGCAGAATTGCTTAGACTAA ATGTGCCAACGGCAATGAAGTTAGCATTTGATAGTTTAAAAAGTTCAACTTTCAAAACAAGGGATGAAACTATAACTGATGTTGGTGGGTTTGACAGCAT TGAGTTGTCTGTGATGCTTTGCAATGATGAGTTTATTAGAAAACTTAATAAGGAATGGAGGGATGAGGATCATGCAACTGATGTTCTTTCAATGTCACAA CACGTGCCTGGCCTTGACCTACCAATTCTTATGTTGGGTGATATAGTGATTTCTGTTGAGACTGCTGCACGACAAGCCGAGGAAAGAGGACATACTCTTA TTGATGAAACTCGTGTTCTCCTGGTTCATGGGTTGTTGCATCTTTTTGGGTTTGATCATGAAATTAGTGAAGAGGCTGAAGCTGAAATGGATAAGGAGGA GGGAGTTCTTTTGGAGAGTCTTGGCTGGAAAGGGAAAGGATTAATTCAGAGTGCATACGATGCAGAAACTACTATGAATCATCATATGGAAAGTTCAGAT GACAGGAAGAAAGAAGGCAGTCTTAGATTCTATAAACCAAAATTCAGCTATATCTTCTGCGATATGGATGGAACGTTGCTGAACAGCAAAAGCCAAATCT CCTTGACCAATGCAAAGGCCTTGAAAGAGGCTTTGTCAAGAGGTGTGAAAGTGGTGATCGCGACTGGAAAAGCACGTCCTGCTGTGATAGATATTTTGAA GGCGGTAGATTTAGCTGGTAAAAATGGCGTTATCTCAGAGTTCTCTCCTGGTGTCTTCTTACAGGGGTTAATTGTTTATGGTAGACAGGGTCGGGAAATT TTTAGAAGCAATTTGGATCTGAGTGTCTGCAGAGAGGCATGTCTCTACTCTTGGGAGCACAAGGTTCCTCTTATTGCATTCAGCAACGATCGTTGCTTGA CATTATTTGAGCACCCTCTAGTTGATTTACTGCATACTGTATATCATGAGCCAAAGGCTGAGATCATGCCTTCAGTTGAGCATCTCTTGTCTGCTGCGGA CATACAGAAGATGATCTTTTTAGACACTGCTGAGGGAGTGGCTATGAACCTGCGGCCATACTGGTCAGAAGCAACTGGAGGCCGTGCCAATGTTGTGCAA GCTGTTCCAGATATGCTTGAAATTGTCCCCCCTGGAACCTCAAAAGGGAGTGGTGTAAAATTGTTGCTTGATCATTTGGGTGTCACTGCAAAGGAGATAA TGGCTATTGGTGATGGTGAAAATGACATCGAGATGCTTGAGTTGGCTTCTCTAGGCATTGCTCTTAGCAATGGATCAGAGAAGACAAAAGCTGTGGCTAA TGTTATTGGTGCCAGCAATGATGAAGATGGTGTGGCCTCTGCTATTTACGAGTATGCATTCTGA
AA sequence Show only first row Show all	>Potri.018G057500.2 pacid=42800699 polypeptide=Potri.018G057500.2.p locus=Potri.018G057500 ID=Potri.018G057500.2.v4.1 annot-version=v4.1 MLPRLSPLLRNSSMARAVPRASTPLPLPTLLPATTLSSLHSPSSLSFAPKPSNFNFLLLTNTGLFNKKFETFSQENYRCTVWASHRGYRKVRQRPAAARR SKEKDLELSVSICIEEGLPNDPEILSIAELLRLNVPTAMKLAFDSLKSSTFKTRDETITDVGGFDSIELSVMLCNDEFIRKLNKEWRDEDHATDVLSMSQ HVPGLDLPILMLGDIVISVETAARQAEERGHTLIDETRVLLVHGLLHLFGFDHEISEEAEAEMDKEEGVLLESLGWKGKGLIQSAYDAETTMNHHMESSD DRKKEGSLRFYKPKFSYIFCDMDGTLLNSKSQISLTNAKALKEALSRGVKVVIATGKARPAVIDILKAVDLAGKNGVISEFSPGVFLQGLIVYGRQGREI FRSNLDLSVCREACLYSWEHKVPLIAFSNDRCLTLFEHPLVDLLHTVYHEPKAEIMPSVEHLLSAADIQKMIFLDTAEGVAMNLRPYWSEATGGRANVVQ AVPDMLEIVPPGTSKGSGVKLLLDHLGVTAKEIMAIGDGENDIEMLELASLGIALSNGSEKTKAVANVIGASNDEDGVASAIYEYAF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G25870			haloacid dehalogenase-like hyd...		Potri.018G057500 [exp]	0	1
AT2G29670			Tetratricopeptide repeat (TPR)...		Potri.001G250100 [exp]	5.09	0.9074
AT1G05200		GLUR3, ATGLR3.4	glutamate receptor 3.4 (.1.2)		Potri.002G230000 [exp]	6.32	0.9144	Pt-GLUR3.3
AT3G19360	C3HZnF		Zinc finger (CCCH-type) family...		Potri.003G061600 [exp]	7.34	0.9023
AT1G78580		ATTPS1	TREHALOSE-6-PHOSPHATE SYNTHASE...		Potri.011G103900 [exp]	11.48	0.8886
AT1G07050			CCT motif family protein (.1)		Potri.001G281700 [exp]	17.54	0.8915
AT1G69360			Plant protein of unknown funct...		Potri.018G020800 [exp]	20.12	0.8663
AT1G21270		WAK2	wall-associated kinase 2 (.1)		Potri.009G154500 [exp]	24.26	0.8536
AT3G15030	TCP	TCP4, MEE35	maternal effect embryo arrest ...		Potri.013G119400 [exp]	27.74	0.8135
AT2G47490		ATNDT1	NAD+ transporter 1, ARABIDOPSI...		Potri.002G200900 [exp]	29.66	0.8371
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Potri.005G222300 [exp]	32.74	0.8653

Compare expression of checked genes

Potri.018G057500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.