Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32830 544 / 0 ATAUR1 ataurora1 (.1) AT2G25880 541 / 0 ATAUR2 ataurora2 (.1.2) AT2G45490 382 / 2e-134 ATAUR3 ataurora3 (.1) AT5G10930 183 / 2e-54 CIPK5, SnRK3.24 SNF1-RELATED PROTEIN KINASE 3.24, CBL-interacting protein kinase 5 (.1) AT5G25110 180 / 6e-53 CIPK25, SnRK3.25 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1) AT5G21326 178 / 1e-52 Ca2+regulated serine-threonine protein kinase family protein (.1) AT1G30270 177 / 5e-52 PKS17, ATCIPK23, SnRK3.23, LKS1, CIPK23 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) AT4G04720 178 / 6e-52 CPK21 calcium-dependent protein kinase 21 (.1) AT1G48490 180 / 5e-51 Protein kinase superfamily protein (.1.2.3) AT5G12180 175 / 6e-51 CPK17 calcium-dependent protein kinase 17 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G235000 [exp] 585 / 0 AT4G32830 553 / 0.0 ataurora1 (.1) Potri.006G080500 [exp] 382 / 2e-134 AT2G45490 470 / 2e-169 ataurora3 (.1) Potri.006G062800 [exp] 181 / 2e-53 AT1G30270 753 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Potri.002G177900 [exp] 177 / 2e-52 AT1G01140 711 / 0.0 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) Potri.011G003400 [exp] 179 / 4e-52 AT4G04720 815 / 0.0 calcium-dependent protein kinase 21 (.1) Potri.018G119200 [exp] 177 / 4e-52 AT1G30270 749 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Potri.017G048400 [exp] 176 / 8e-52 AT1G12680 471 / 7e-164 phosphoenolpyruvate carboxylase-related kinase 2 (.1) Potri.019G048800 [exp] 174 / 3e-51 AT5G58380 539 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.016G138400 [exp] 174 / 9e-51 AT3G08720 639 / 0.0 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005487 [exp] 546 / 0 AT4G32830 545 / 0.0 ataurora1 (.1) Lus10006033 [exp] 488 / 9e-176 AT4G32830 488 / 2e-175 ataurora1 (.1) Lus10020580 [exp] 372 / 2e-130 AT2G45490 482 / 3e-174 ataurora3 (.1) Lus10006266 [exp] 330 / 6e-114 AT2G45490 427 / 1e-152 ataurora3 (.1) Lus10042816 [exp] 182 / 4e-54 AT1G30270 794 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Lus10028115 [exp] 181 / 1e-53 AT1G30270 793 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Lus10008958 [exp] 181 / 4e-53 AT5G04870 877 / 0.0 calcium dependent protein kinase 1 (.1) Lus10028862 [exp] 181 / 2e-52 AT5G04870 940 / 0.0 calcium dependent protein kinase 1 (.1) Lus10013603 [exp] 176 / 2e-50 AT3G10660 803 / 0.0 calmodulin-domain protein kinase cdpk isoform 2 (.1) Lus10021248 [exp] 176 / 2e-50 AT3G10660 809 / 0.0 calmodulin-domain protein kinase cdpk isoform 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.018G057700.2 pacid=42801910 polypeptide=Potri.018G057700.2.p locus=Potri.018G057700 ID=Potri.018G057700.2.v4.1 annot-version=v4.1 ATGGCGATTGCTGCGGAGGCCCAGCCCCAAGAGAAGGCGAGAACAGATGTATCAGGGGCAGAGAAGAAGAGATGGACGCTTAACGATTTTGATATGGGAA AGCCACTTGGGCGTGGAAAGTTTGGTCATGTTTACTTAGCCAGAGAAAAAAGGAGCAATCATATTGTGGCTTTGAAGGTTCTGTTTAAGAGTCAGTTGCA ACAGTCACAGGTTGAACATCAGCTCCGTCGCGAAGTTGAAATTCAGAGTCATCTTAGACATCCCAATATATTGCGCCTTTACGGTTACTTTTATGATCAG AAACGAGTTTATTTGATATTAGAATATGCAGCCAAAGGTGAACTCTACAAAGAATTGCAGAGGTGTAAATACTTTAGCGAAAGACGTGCTGCTACTTATG TTGCGTCATTAGCCAGGGCACTGATTTATTGTCACAGCAAGCATGTGATACACAGAGACATCAAGCCAGAGAACCTGTTAATTGGTGCACAGGGTGAGCT CAAGATTGCAGACTTTGGTTGGTCAGTGCACACTTTTAACCGCAGGCGTACGATGTGTGGTACATTGGACTACCTCCCACCAGAGATGGTGCAAAGTGTA GAGCATGATGCTAGTGTTGATATATGGAGCCTGGGTGTTTTATGCTATGAGTTTTTATATGGCATCCCCCCGTTTGAGGCCAAGGAACACTCAGACACAT ACAAAAGGATTGTGCAAGTGGATCTGAAGTTCCCTCCTAAACCAATTGTCTCTTCTGCTGCAAAGGACCTTATTAGTCAGATGCTTGTCAAGGATTCTGT TGAGCGACTACCATTACATAAGCTGCTTGAGCATCCCTGGATCGTTCAAAATGTTGATCCCTCTGGCATCTTTAGGGGTTGA
AA sequence Show only first row Show all	>Potri.018G057700.2 pacid=42801910 polypeptide=Potri.018G057700.2.p locus=Potri.018G057700 ID=Potri.018G057700.2.v4.1 annot-version=v4.1 MAIAAEAQPQEKARTDVSGAEKKRWTLNDFDMGKPLGRGKFGHVYLAREKRSNHIVALKVLFKSQLQQSQVEHQLRREVEIQSHLRHPNILRLYGYFYDQ KRVYLILEYAAKGELYKELQRCKYFSERRAATYVASLARALIYCHSKHVIHRDIKPENLLIGAQGELKIADFGWSVHTFNRRRTMCGTLDYLPPEMVQSV EHDASVDIWSLGVLCYEFLYGIPPFEAKEHSDTYKRIVQVDLKFPPKPIVSSAAKDLISQMLVKDSVERLPLHKLLEHPWIVQNVDPSGIFRG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G32830		ATAUR1	ataurora1 (.1)		Potri.018G057700 [exp]	0	1
AT3G19184	B3		AP2/B3-like transcriptional fa...		Potri.018G140700 [exp]	1.41	0.9509
					Potri.017G113501 [exp]	5.19	0.9525
AT1G23790			Plant protein of unknown funct...		Potri.010G038600 [exp]	11.22	0.9455
AT1G10780			F-box/RNI-like superfamily pro...		Potri.001G210800 [exp]	12.72	0.9345
AT4G21270		KATAP, ATK1	KINESIN-LIKE PROTEIN IN ARABI...		Potri.004G031600 [exp]	13.49	0.9432	Pt-ATK1.1
AT5G04320			Shugoshin C terminus (.1.2)		Potri.004G216000 [exp]	15.09	0.9451
AT3G20060		UBC19	ubiquitin-conjugating enzyme19...		Potri.001G254500 [exp]	18.81	0.9439	UBC19.2
AT1G76310		CYCB2;4	CYCLIN B2;4 (.1)		Potri.002G010000 [exp]	18.84	0.9441
AT2G26760		CYCB1;4, CYC3	Cyclin B1;4 (.1)		Potri.001G272000 [exp]	23.23	0.9422
AT3G53320			unknown protein		Potri.016G085600 [exp]	23.64	0.9174

Compare expression of checked genes

Potri.018G057700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.