Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32820 2023 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007462 [exp] 2270 / 0 AT4G32820 1898 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10005496 [exp] 749 / 0 AT4G32820 585 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.018G057900.3 pacid=42801517 polypeptide=Potri.018G057900.3.p locus=Potri.018G057900 ID=Potri.018G057900.3.v4.1 annot-version=v4.1 ATGTTCTCTATTGCAGCCATTAACGATACTGATTCTAAAGAGCAATGGGAACCCTTAGCCCCGACTAAAGAAGCCCAGGAATTTCATCTTACACAAAATT ATCATGATGGGCTGCTTAAATTACAAGCGAAAGAGTATGATAAGGCATGCGAGTTATTGGAATCGGTTTTAAAAGATCCGTTAATATCAAATGCTCAGGC TGATCGTAATGCGAGTGATGGTCATTTGCTACAACTCAGATTCTTGGTGCTGAAGAATCTTGCAACTGTTTTTCTTCAACAAGGTCCTAGTCATTATGAG AGTGCTCTTCGCTGTTACCTCCAAGCTGTAGAGATTGATACCAAAGATTCTGTTGTCTGGAATCAGCTGGGAACATTATCTTGCTCGATGGGTTTGTTGA GTATTTCACGTTGGGCGTTTGAGCAAGGGCTTCTATGTAGCCCAAATAATTGGAATTGCATGGAGAAACTATTGGAAGTTCTTATTGCCATTGGTGATGA GGTCGCATGCCTTTCTGTAGCAGAGTTAATTTTGAGACATTGGCCTTCACATTCTCGTGCTTTGCATGTCAAAAATACTATTGAAGAGTCGGAGCCAGTT CCATTTTCTCCTAGAGGTATAGATAAGCTGGAACCTAAGCATGTCAGGCTTAAATTTCTTGATAAGAGAAAAGCAACCAATGAAAATCTTGATGAGGGTA TTGCATGTAAACGGGCAAACCACAACATAGAATTGCTCCTACCCGAAGTTTCATGGGCAGCTCTCACTGATGCCATTCTGGAAATTTTACTTAAACTCAA TGGTTTTGGTTCTGAGATGGGGGGTGACACAGTATGCAGATCTGGGGATATCAGGTTAACTATAAACATGCCTTCAAATATGGAAATTATCATGGAGTCT GTGGAAAAGAAAGGGTCAAAATCCATCCCTAGCGTTCAAAGCATGTCTTTTGTCGATTGTAACTCTGAAAGAGCCAGCAGTGTTAAGGAAAGGGATCCAA ATATTATTGATGAACAGCCTCATGAGAGGCGGAGCACTCGTCTTAGGAGTCGTAAACCAGGAAAAGAAGAATTGGATTTTGATACCAGAAAGGATCTGGC CAAAGTCGTAGTTCAGCTCATAGAACCTTTCATAGTTAAAAATGAGGATTCTGATCTTGTGGGTAGTTGTTCGGTTCCATGTTTTGATCAGGCTAATTCA TTGGACACGGAACACAATGATGTGGCTGATTTTGTAAGGGAAACTTCAAAAAATTATGGTGCTTACCATATGGGCCATTTGCTTTTGGAACATGCTGCAA GCAGGGGCCTTAAGTATCAAGATGCGTTTGTCAAATTCTTGGAGTTGGAGAGGTTGACAAGACATTGGGGGAGAGATAGGACGCCTGAATGCTGCCTTTT TCTAGCTGAACTATATTATGATCTTGGATCGTTACCTTCAAATGTTTCCAAGATGTCTGAATATTTGTCAGAGGCTTCCTATCATCTTTGTAAAATAATT GAATCAGTAGCTTTGGATTATCCTTTTCACTTGACTCATGTATCTGGAAATATAAATTTCTCTTCAGATAAGAGTTTCCAAGATAGTGATGAAACATTAA AAGAAGGCACTGGAGGCTGGGATTCACTTTTAAACATTTCCTTATTGGACAACAAAAGTTCCTTCTGGGTTCGGTATTTCTGGTTGAGTGGGAAATTGTC TATCGTGGATGGAAACAAGGCAAAAGCTCATGGAGAGTTCTGTATTTCCTTGTCTGTTTTGGCAAAGAAGGAAGTAACAAACAGTGCTCCATCAGTCTGT CTTCCACACCTGAAGATTGATAAAGAGTTAACTTTAGACAGGATTCTGCATGGAATTAATCTATTAAAGCTTGATCTCTTGCTTGAGAAGACCGTAGGAG AGAAGATTGAGAAAGAAATGTATTCGGATTGTATAGACTTGCTTGCTCCACTTCTATTCTCTTCCAAGCATGTTCACCTCAATGTATTGCCATTGCCTGC TGCTGATAAGAAAGGTGAAGAATTTACATGCATCGAACTTTCAGCATTAGATACATTAATTGAAGCATGTGAGAAGGCAAAGCCAATGGAAATTGAGGTA TGTTTGAAGAGTCACCAACGGAAGCTGGAAATACTCTTGATACTAGCTGGTATGGATGGATATGTAACCTTCCATCAGAAGTCTGAGTTAAAGGCATACT TTGCCTCTGATATAGTGTCAAAAGAAAATCCAGAGAAGCACTGGAATGACTTGGTGATGGAGGAAGTGAAAGCAATTTCACAATGTGTATCACAATTCAA GAACTTTCTGGGTCCATCTGTTGATTCTAATGGAAAAATCATTCACTTTGGCAGTATTGGCGACATTCAGTCTTTGCTGCTGGCTGTCATGTGCCATATT GCAAATTACTTATCTAAGAAATCTTCTGTGCCAGCGATTAGTGAAGAATTAGAACAAAAGCAAATTTGCTGCTTTGTTGATGCAGGCATTGCATACTGCA AGCTTCAACATCTCGTCCATACCATCCCTGTTAAAACCCAAGTTGAACTAATTGTTGCAATCCATGACTTACTTGCTGAGTATGGCCTCTGCTGTGCTGG CGGGGATGGTGAAGGGGAGGAAGGAACATTTCTTAAATTTGCAATAAAGCATCTCTTGGCATTGGACATGAAGCTCAAGTCCAACTCAAACTCTTCCAAC ATAGAAGCAATTCAACATGATGACAAGCTTTATAGCCCAAACAAAACATTTAAAACTGAGACAATATTAAATACATTGGGTGTAGAGGGGGGTGGAGCTG AAATCAATGAAGTAAGTGCTACTATGAGTGATGGTTTTGGAGGGATTTCTTCCAAAGATGTATCATCTCCTGCAGGTCTAGAGAAAGACCATGCAGATGT AGAATGCAGAAAAGTAGGTGGCAATGAGGGGAAGAACAAAGGAGAAAAACCCATAGAACATATCAATGAACTTAGTGAAGATGAAAGAGAGGAACTTGAG TTACTAATTGATAATGCTTTGGATCAGTGCTTTTTCTGCTTGTACGGTCTCAATATTCGATCTGATTCTTCCTATGACGATGACCTAGCCACTCACAAAA ATACCAGTCGTGGAGATTATCAGTCCAAGGAACAATGTGCTGATGTTTTTCAGTATATACTGCCATGTGCAAGAGCTTCGTCAAAAACTGGATTGATAAA ACTTCGTAGAGTGTTAAGAGCTATACGCAAACACTTTCCACAACCGCCAGAAGAAGTTCTTGCTGGAAATGCAATAGATAAATTTTTAGATGATCCTGAT TTATGTGAAGACAAACTCTCAGATGAGGCTGGATCTGAAGGGTATCTTGAAACCATAACAAAGGTAATATTTCCTGATGCAGGAAGTGTCAAACAGCACA GGGCATTGATGGTCAGAAGCTCCGAGCCATATTTTGAAGTGTATTGCAACTTGTATTATTTCCTAGCCCTTTCAGAGGAAATGAATGCAACTGATAAATG GCCAGGCTTTGTACTGACCAAGGAAGGGGAAGAGTTCGTACAACAAAATGCAAATCTCTTTAAATATGATCTACTGTACAACCCTCTACGCTTTGAAAGT TGGCAACGGCTTGGAAATACTTACGATGAGGAGGTAGACTTGTTGCTAAATGATGGAAGTAAGCACATAAATGTGGCAGGGTGGAGAAAAAATGTTACTC TACCTCAGAGAGTTGACACAAGTCGAAGGAGGAGTAGGCGTTGTCTATTAATGAGTTTGGCTTTAGCAAAGACACCAGCCCAGCAGTGTGAGATACATGA GCTGCTGGCACTGGTCTGCTATGACAGCCTTCAGAATGTGGTACCTTTTTATGACCAAAGATCTGCCATACCCTCGAAAGATGCAGTATGGATGGCATTT TGTGAGAACTCATTGAAGCATTTTAAGAAAGCTCACACACAAAAGCAGGATTGGTCGCATGCATTCTACATGGGGAAACTCTGCGAAAAGCTTGGATACT CATATGAGACATCACTATCATATTATAGTGTAGCTATCGCTTTGAATTCATCAGCTGTGGATCCTGTCTATAGGATGCATGCTTCTCGCCTAAAGTTACT TTGCAAATCTGGAAGACTGAATCTGGAGGTTTTAAAGGTCCTTGCAGAATATTCCTTTAATGAATCAACAAAGGATTCTGTCATGAGCATACTTAGTACA TTTGCACCTGAAGTGTCATGTTCAGCAGATAATATTGAGGACATAAGCACTGAGGAAAGTTTTGAGAGAAAACATGAGGAATCAGTTCAGTTAGAAGAGG TGTGGCAAATGCTTTACAATGATTGCATTTCTGCTTTGGAAGTTTGTGTTGAAGGCGATCTCAAACATTTTCATAAGGCCAGATACATGCTTGCACAAGG ACTGTATAAAAGGGGTTTGAATGGTGATTTGGAGAGAGCAAAGGATGAACTTTCTTTTTGCTTCAAATCTTCTCGCTCATCCTTCACTATAAATATGTGG GAGATTGATGGGATGGTCAAAAAAGGAAGGCGCAAAACACCAGGTTTTTCTGGGAACAAAAAGGCCCTCGAAGTAAACTTACCAGAAAGTTCCCGGAAAT TTATTACTTGCATTCGGAAGTATTTGTTGTTCTATCTGAAATTGTTGGAAGAAACTGGAGACATTTGTACACTTGATCGAGCATTTATATCTCTAAGGGC AGATAAGAGGTTTTCGTTGTGCATTGAAGATCTTGTACCAGTAGCTCTTGGGAGGTTTATCAAGACCCTTATATTATCGATATCTCAAGTTGAGACTGCC GACTCTGGTGTTCCTGGCAACTCTGGTCAGCAACTGGAGAAGATGTTCTCATTGTTTATGGAACAGGGGAACTTATGGCCAGAGATATTAAGCTTGCCTG AGATCAGAAGCCCAGTAATTTCTGAGAGCAGCTTATATGGATATCTCCACAGATATATTGCTTCACTAGAGGGGAATGGAAAGCTTGAGACACTTGAAGC AATAAATGAGAAGATTCGAAAGCGCTTTAAAAATCCCAAGTTGTCCAATAGCAACTGTGCAAAGGTATGCAGGCATGCGTCCTTTGCCTGGTGCCGATCT CTTATAATCAGTTTGGCATTGATCACCCCCGTACAATCTGGACTCCAAAGTGAGATACATGCCCTTAACTCATCAGATAGCAATTTGGAAAGTAGTCTTT TGCTCTGTATTGATCTGCAAACAAATGAGTTATGGAGTCAATCATTTGAGGATTCTACCTCCTTGGGAAATCTTGAAACAAAATGGAACCCCATGTTGAG TAGAATCAAGAATATAGTGATTAAGAAAGTTTCAGATGAAAATATTGAGACTGCTACCTCTCTGTTTAGGAGCTCTTATAATTTCTACCGTGAGAGTTCC TGTGTAATGCTCCCATCTGGTATCAACCTTTGTTTAGTTCCATCTCGGCTGGCAGTACAAGCCCAAGTTCAGCCTAACTTGGACGGAGTTGAAATTCTTG ATCTTAGCATTCCAAGGAAGCTTCTCTTGTGGGCTTATGCACTATTGCATGGCCGTTATGCTAATATCTCAGTTGTTGTGAAGCATTGTGAAGAAAATGT GAAGTCAAAGATGAAAAAGGGACCTGGAACCTCATTTGTGCCATCCAATGCAAGCCTGCCTGCTGCTACCGTTATTCATACAGCTACAGGTGGTGGGAAA GATAGTGCTACTCAAGGTGGTAGCAATGAACCAGAGGTGCCTTTGGTTAGCGTACCAGTGACTGCTGTGACATCGGTCTCATTATCTGAGGGTGATAGCA TACAGTGCACAAATCCGCCACTAACTTCTGATGAGGGCCAAAAGATTTTATTCGCTACTCCCCAGCAAAATCAAGATAACAGCACCCCTGACGGAAGGAA TTTTGCAATGAATGAATGA
AA sequence Show only first row Show all	>Potri.018G057900.3 pacid=42801517 polypeptide=Potri.018G057900.3.p locus=Potri.018G057900 ID=Potri.018G057900.3.v4.1 annot-version=v4.1 MFSIAAINDTDSKEQWEPLAPTKEAQEFHLTQNYHDGLLKLQAKEYDKACELLESVLKDPLISNAQADRNASDGHLLQLRFLVLKNLATVFLQQGPSHYE SALRCYLQAVEIDTKDSVVWNQLGTLSCSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACLSVAELILRHWPSHSRALHVKNTIEESEPV PFSPRGIDKLEPKHVRLKFLDKRKATNENLDEGIACKRANHNIELLLPEVSWAALTDAILEILLKLNGFGSEMGGDTVCRSGDIRLTINMPSNMEIIMES VEKKGSKSIPSVQSMSFVDCNSERASSVKERDPNIIDEQPHERRSTRLRSRKPGKEELDFDTRKDLAKVVVQLIEPFIVKNEDSDLVGSCSVPCFDQANS LDTEHNDVADFVRETSKNYGAYHMGHLLLEHAASRGLKYQDAFVKFLELERLTRHWGRDRTPECCLFLAELYYDLGSLPSNVSKMSEYLSEASYHLCKII ESVALDYPFHLTHVSGNINFSSDKSFQDSDETLKEGTGGWDSLLNISLLDNKSSFWVRYFWLSGKLSIVDGNKAKAHGEFCISLSVLAKKEVTNSAPSVC LPHLKIDKELTLDRILHGINLLKLDLLLEKTVGEKIEKEMYSDCIDLLAPLLFSSKHVHLNVLPLPAADKKGEEFTCIELSALDTLIEACEKAKPMEIEV CLKSHQRKLEILLILAGMDGYVTFHQKSELKAYFASDIVSKENPEKHWNDLVMEEVKAISQCVSQFKNFLGPSVDSNGKIIHFGSIGDIQSLLLAVMCHI ANYLSKKSSVPAISEELEQKQICCFVDAGIAYCKLQHLVHTIPVKTQVELIVAIHDLLAEYGLCCAGGDGEGEEGTFLKFAIKHLLALDMKLKSNSNSSN IEAIQHDDKLYSPNKTFKTETILNTLGVEGGGAEINEVSATMSDGFGGISSKDVSSPAGLEKDHADVECRKVGGNEGKNKGEKPIEHINELSEDEREELE LLIDNALDQCFFCLYGLNIRSDSSYDDDLATHKNTSRGDYQSKEQCADVFQYILPCARASSKTGLIKLRRVLRAIRKHFPQPPEEVLAGNAIDKFLDDPD LCEDKLSDEAGSEGYLETITKVIFPDAGSVKQHRALMVRSSEPYFEVYCNLYYFLALSEEMNATDKWPGFVLTKEGEEFVQQNANLFKYDLLYNPLRFES WQRLGNTYDEEVDLLLNDGSKHINVAGWRKNVTLPQRVDTSRRRSRRCLLMSLALAKTPAQQCEIHELLALVCYDSLQNVVPFYDQRSAIPSKDAVWMAF CENSLKHFKKAHTQKQDWSHAFYMGKLCEKLGYSYETSLSYYSVAIALNSSAVDPVYRMHASRLKLLCKSGRLNLEVLKVLAEYSFNESTKDSVMSILST FAPEVSCSADNIEDISTEESFERKHEESVQLEEVWQMLYNDCISALEVCVEGDLKHFHKARYMLAQGLYKRGLNGDLERAKDELSFCFKSSRSSFTINMW EIDGMVKKGRRKTPGFSGNKKALEVNLPESSRKFITCIRKYLLFYLKLLEETGDICTLDRAFISLRADKRFSLCIEDLVPVALGRFIKTLILSISQVETA DSGVPGNSGQQLEKMFSLFMEQGNLWPEILSLPEIRSPVISESSLYGYLHRYIASLEGNGKLETLEAINEKIRKRFKNPKLSNSNCAKVCRHASFAWCRS LIISLALITPVQSGLQSEIHALNSSDSNLESSLLLCIDLQTNELWSQSFEDSTSLGNLETKWNPMLSRIKNIVIKKVSDENIETATSLFRSSYNFYRESS CVMLPSGINLCLVPSRLAVQAQVQPNLDGVEILDLSIPRKLLLWAYALLHGRYANISVVVKHCEENVKSKMKKGPGTSFVPSNASLPAATVIHTATGGGK DSATQGGSNEPEVPLVSVPVTAVTSVSLSEGDSIQCTNPPLTSDEGQKILFATPQQNQDNSTPDGRNFAMNE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G32820			Tetratricopeptide repeat (TPR)...		Potri.018G057900 [exp]	0	1
AT2G28290		CHR3, SYD	SPLAYED, CHROMATIN REMODELING ...		Potri.008G195900 [exp]	2.00	0.9179
AT5G07980			dentin sialophosphoprotein-rel...		Potri.012G061400 [exp]	3.87	0.8836
AT2G17930			Phosphatidylinositol 3- and 4-...		Potri.005G114300 [exp]	4.24	0.8933
AT4G17330		ATG2484-1	G2484-1 protein (.1)		Potri.001G157300 [exp]	4.47	0.8951
AT3G50380			Protein of unknown function (D...		Potri.007G034900 [exp]	4.89	0.8747
AT1G22860			Vacuolar sorting protein 39 (....		Potri.001G081900 [exp]	4.89	0.8890
AT2G36850		CHOR, ATGSL8, A...	CHORUS, glucan synthase-like 8...		Potri.015G089300 [exp]	5.09	0.8544	ATGSL08.2
AT4G33200		XI-15, ATXI-I, ...	MYOSIN XI-15, MYOSIN XI I, myo...		Potri.006G220000 [exp]	5.47	0.8789
AT1G30410		ATMRP13, ABCC12	ATP-binding cassette C12, mult...		Potri.004G034700 [exp]	8.30	0.8434	ATMRP12.4
AT1G48090			calcium-dependent lipid-bindin...		Potri.008G100600 [exp]	9.48	0.8722

Compare expression of checked genes

Potri.018G057900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.