Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11700 1779 / 0 unknown protein AT4G32920 1613 / 0 glycine-rich protein (.1.2.3) AT5G47020 1076 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G234500 [exp] 2227 / 0 AT5G11700 1793 / 0.0 unknown protein Potri.003G086200 [exp] 1133 / 0 AT5G47020 1620 / 0.0 unknown protein Potri.001G148300 [exp] 1127 / 0 AT5G47020 1624 / 0.0 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005497 [exp] 1866 / 0 AT5G11700 1842 / 0.0 unknown protein Lus10007461 [exp] 1858 / 0 AT5G11700 1835 / 0.0 unknown protein Lus10043045 [exp] 1442 / 0 AT5G11700 1537 / 0.0 unknown protein Lus10011144 [exp] 1379 / 0 AT5G11700 1470 / 0.0 unknown protein Lus10007257 [exp] 822 / 0 AT5G47020 1321 / 0.0 unknown protein Lus10000229 [exp] 186 / 3e-54 AT4G32920 182 / 5e-54 glycine-rich protein (.1.2.3) Lus10007259 [exp] 124 / 5e-31 AT5G47020 218 / 2e-64 unknown protein Lus10007258 [exp] 110 / 6e-28 AT5G47020 169 / 1e-49 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.018G058300.1 pacid=42801671 polypeptide=Potri.018G058300.1.p locus=Potri.018G058300 ID=Potri.018G058300.1.v4.1 annot-version=v4.1 ATGGCTCGATTCCAGTTCAATTTCGCCTTTATAGCCTTTTTAATTACAACAATAACCCTAACCTCAAACCCTAGAGTTCTCTCTTCGGATTCGGAATCCG ATTCCTTTTCGATAATTGATTTCGATTCCAATCTCCTCTTCCACCAAGACTACTCACCACCGTCACCACCTCCACCGCCACCGCATCCACCGTCGGCATC TTGCACTGATGATCTCGGAGGCATCGGTTCGATTGATACTGCGTGTCAAATAGTTACCGACGTGAATCTCACTCGTGACGTGTATATAGAAGGGAAAGGA GATTTTTATATCCATCCCGGTGTGAGGTTCCAATGCCCTAATTTTGGATGTTCAATAACGATAAATATCTCAGGAAATTTCAATTTATCAGTTAATTCGT CGATTTTGACCGGTACGTTTGAGCTTGTTGCGAATAATGCTAGTTTTTTTAATGGTTCGGTTGTGAATACGACGGGATTAGCTGGGGATCCTCCTCCGCA AACGAGTGGGACACCACAGGGGTTAGAAGGGGCCGGTGGAGGGCATGGAGGGAGAGGGGCATGTTGTTTGATGGATAAAGAGAAGTTGCCGGAGGATGTT TGGGGAGGGGATGCGTATTCGTGGTCGAGTTTGCAGGAGCCATGTAGTTATGGGAGTAAAGGAGGGAGTACGAGTAAGGAAGTGGATTATGGAGGGGGAG GAGGTGGGAGAGTGAAAATGACAGTGAAGGAGTATTTGGTTTTGGATGGGGCTGTATTGGCTGATGGTGGTAATGGGGGTGTCAAGGGAGGTGGTGGTTC TGGTGGGAGCATACATTTGAAGGCATATAAAATGACTGGAGGTGGCAGTATAAGTGCTTGTGGAGGTAATGGTTTTGCCGGCGGTGGCGGGGGAAGAGTT TCAGTTGACATTTTCAGTAGACATGATGACCCTCAAATATTTGTGCACGGAGGAAATAGTCTTGGTTGTCCAAAAAATGCAGGTGGTGCTGGAACTTTAT ATGATGCTGTTGCCCGGAGCCTTACCGTAAGCAATCACAATATGTCTACTGATACAGATACGCTTCTATTGGAGTTTCCTTATCAGCCTCTCTGGACAAA CGTTTATGTTCGAAACCATGGCAGGGCTACTGTTCCATTGTTCTGGAGTCGTGTCCAGGTCCAAGGACAAATAAGTCTTTTATGTAGTGGAGTCTTAAGC TTTGGGCTGGCTCATTATGCTTCATCAGAGTTTGAATTACTGGCCGAAGAGCTTTTAATGAGTGACTCTGTAATCAAGGTATATGGTGCTCTACGCATGA GTGTAAAAATGTTCTTAATGTGGAATTCCCAAATGCTCATAGATGGGGGTGAAGATGCAACTGTTGGGACTTCTTTGCTTGAGGCTAGCAATCTAGTTGT TCTCAAGGAATCATCTGTCATACATTCTAATGCCAATCTGGGAGTTCATGGTCAAGGTCTATTGAATTTGTCAGGACCAGGCAATTGGATCGAAGCTCAA CGTTTGGTTCTATCACTATTTTACAGTATTCATGTTGCACCTGGATCTGTTTTGCGTGGTCCTGTTGAGAATGCAACAAGTGATGCTATTACACCACGGC TCCATTGCCAACTTGAAGAGTGCCCTTCTGAACTACTTCATCCCCCTGAAGATTGCAATGTGAACTCATCTCTTTCTTTTACTCTTCAGATATGCCGAGT GGAGGATATTACTGTTGAAGGACTTATAGAAGGATCTGTTGTTCATTTTCATCGGGCCAGAACAATATATGTTCCGTCTTCTGGAACAATAAGTGCGTCT GGCATGGGTTGCACTGGTGGTGTGGGTAGAGGTAATGTTTTAAGCAATGGTGTTGGCAGTGGTGGTGGCCATGGTGGTAAAGGTGGGTCTGCATGTTACA ACGATAGATGTATTGAGGGTGGTGTTTCATATGGTAATGCAGAGTTACCTTGTGAACTTGGTAGTGGAAGCGGAGAGGAAATGTCTGCTGGTTCTACTGC AGGTGGTGGTATTATAGTAATGGGTTCATTGGAGCATCCCTTGTCAAGTTTGTCTGTTGACGGTTCAGTCAGAGCTGATGGTGAAAGTTTTAAAGGAATC ACCAGAGATCAACTGGTTGTCATGAATGGTACTGGTGGAGGTCCTGGCGGTGGCTCTGGAGGAACTATTCTTCTGTTCTTGCATACTCTAGATCTTGGTG GGTATGCTGTTCTTTCAAGTGTTGGGGGATATGGTAGTCCGAAGGGGGGCGGTGGAGGTGGTGGTGGAAGGGTTCACTTCCATTGGTCAGACATTCCAAC TGGGGACGTGTACCAGCCCATTGCTCGTGTGAATGGAAGCATCCACACTTGGGGAGGATTGGGAAGAGATGAGGGTCATGCTGGGGAAAACGGGACAGTG TCGGGGAAAGCTTGCCCAAAGGGGTTGTATGGAATATTTTGTGAGGAATGCCCAGCTGGAACATATAAGAATGTAACTGGATCCGATAGAGCTCTCTGTC GTCCTTGCCCTGCTGATGATATTCCTCATCGTGCTGCTTATGTAACTGTTCGAGGTGGTATTGCCGAAACACCATGTCCTTACAAATGTGTTTCAGACAG ATTTCACATGCCACATTGTTATACAGCCCTGGAAGAGTTGATTTACACTTTTGGTGGGCCATGGCTGTTTGGACTTCTTCTTTTGGGTCTCCTAATCCTC TTAGCGCTGGTGCTCAGTGTTGCTCGGATGAAATTTGTTGGGGTGGATGAATTACCTGGTCCAGCTCCCACTCAACATGGTTCCCAGATAGATCATTCTT TTCCCTTCCTGGAGTCATTGAATGAGGTCTTGGAGACAAATAGAGCTGAGGAGTCTCAGAGTCATGTGCACAGAATGTATTTTATGGGTCGTAATACTTT CAGTGAGCCTTGTCATCTTCCCCACACTCCTCCTGAGCAAATAAAAGAGATTGTATATGAGGGTGCATTCAATACATTTGTGGATGAGATTAATGGTATA GCTGCTTATCAGTGGTGGGAAGGTGCAATTTACAGTATACTTTCTGTTCTTGCATACCCCCTTGCATGGTCATGGCAGCAATGGAGACGGAGGATCAAAT TGCAAAGACTGCGAGAGTTTGTTCGATCAGAGTATGATCATGCTTGCTTGCGCTCTTGCCGTTCACGGGCTCTCTATGAAGGGCTTAAGGTAGCTGCAAC TTCTGATTTAATGCTCGTGTACTTGGATTTCTTCCTTGGTGGAGATGAGAAAAGAACTGATATTCCTGCTCACCTACATCAAAGATTTCCAATGTCTATT CTTTTTGGAGGTGATGGAAGTTATATGGCTCCTTTCTCAATTCAAAGTGACAATATTCTTACCAGCCTCATGAGCCAGATGGTCCCTCCTACCACTTGGT ATCGAATGGCAGCTGGTTTGAATGCACAGCTGCGCTTAGTTCGTCGTGGGCGGCTAAGAGTAACTTTTCGACCTGTCCTGAGATGGCTTGAAACACATGC AAATCCAGCTTTGAGAATCCATGGGATACATGTTAATCTTGCGTGGTTTCAGGCTACTACTTCTGGTCATTGCCAGTATGGACTTTTGGTTTATGCTGTT GAAGAAGAAAGTGAACATATATTTATTGAAGGCGTTGATGGTGTGAAACAAGTTGAAGAAGAATCTCGCCTCTTGGTTAGTGGTGTGAACAACACACACA GCGAAAATCCATCTGGTCATTGGAGAGAAGAGATGCTTGTATCCCAAGCTCACAGAAGCAGTTATGGGGGAATCATAGTTACTAACAGCTTAAGAATGCT TAAAGAGAAGAGGGATTTATTTTACCTCATCTCTTTCATAGTTCATAACACTAAACCTGTTGGCCATCAGGATCTTGTTGGTTTGGTCATCTCTATGCTT CTTTTAGGAGATTTTAGCTTAGTGTTGCTTACTTTACTCCAGCTGTATTCAATTTCATTGGTGGATGTCTTTCTGGTTTTGTTTATCTTACCTCTTGGCA TTCTTATGCCCTTTCCTGCGGGGATCAATGCTTTATTCAGTCATGGACCTAGGCGCTCTGCAGGCCTTGCACGTATCTATGCTTTGTGGAATGTCACATC CTTGATTAATGTTGTTGTTGCATTTATTTGTGGATATATTCACTATAACAGTCAATCGCCCTCGAGTAAGAAGTTCCCCTTTCAGCCATGGAATATTAAC ATGGATGAAAGTGAATGGTGGATTTTTCCAGCTGGACTGGTTGCATGTAAAATTTTACAATCTCAACTTGTTAATTGGCACATTGCAAATCTGGAGATTC AAGACCGCTCGCTGTATAGTAACGATTTTGAGCTGTTCTGGCAGTCGTGA
AA sequence Show only first row Show all	>Potri.018G058300.1 pacid=42801671 polypeptide=Potri.018G058300.1.p locus=Potri.018G058300 ID=Potri.018G058300.1.v4.1 annot-version=v4.1 MARFQFNFAFIAFLITTITLTSNPRVLSSDSESDSFSIIDFDSNLLFHQDYSPPSPPPPPPHPPSASCTDDLGGIGSIDTACQIVTDVNLTRDVYIEGKG DFYIHPGVRFQCPNFGCSITINISGNFNLSVNSSILTGTFELVANNASFFNGSVVNTTGLAGDPPPQTSGTPQGLEGAGGGHGGRGACCLMDKEKLPEDV WGGDAYSWSSLQEPCSYGSKGGSTSKEVDYGGGGGGRVKMTVKEYLVLDGAVLADGGNGGVKGGGGSGGSIHLKAYKMTGGGSISACGGNGFAGGGGGRV SVDIFSRHDDPQIFVHGGNSLGCPKNAGGAGTLYDAVARSLTVSNHNMSTDTDTLLLEFPYQPLWTNVYVRNHGRATVPLFWSRVQVQGQISLLCSGVLS FGLAHYASSEFELLAEELLMSDSVIKVYGALRMSVKMFLMWNSQMLIDGGEDATVGTSLLEASNLVVLKESSVIHSNANLGVHGQGLLNLSGPGNWIEAQ RLVLSLFYSIHVAPGSVLRGPVENATSDAITPRLHCQLEECPSELLHPPEDCNVNSSLSFTLQICRVEDITVEGLIEGSVVHFHRARTIYVPSSGTISAS GMGCTGGVGRGNVLSNGVGSGGGHGGKGGSACYNDRCIEGGVSYGNAELPCELGSGSGEEMSAGSTAGGGIIVMGSLEHPLSSLSVDGSVRADGESFKGI TRDQLVVMNGTGGGPGGGSGGTILLFLHTLDLGGYAVLSSVGGYGSPKGGGGGGGGRVHFHWSDIPTGDVYQPIARVNGSIHTWGGLGRDEGHAGENGTV SGKACPKGLYGIFCEECPAGTYKNVTGSDRALCRPCPADDIPHRAAYVTVRGGIAETPCPYKCVSDRFHMPHCYTALEELIYTFGGPWLFGLLLLGLLIL LALVLSVARMKFVGVDELPGPAPTQHGSQIDHSFPFLESLNEVLETNRAEESQSHVHRMYFMGRNTFSEPCHLPHTPPEQIKEIVYEGAFNTFVDEINGI AAYQWWEGAIYSILSVLAYPLAWSWQQWRRRIKLQRLREFVRSEYDHACLRSCRSRALYEGLKVAATSDLMLVYLDFFLGGDEKRTDIPAHLHQRFPMSI LFGGDGSYMAPFSIQSDNILTSLMSQMVPPTTWYRMAAGLNAQLRLVRRGRLRVTFRPVLRWLETHANPALRIHGIHVNLAWFQATTSGHCQYGLLVYAV EEESEHIFIEGVDGVKQVEEESRLLVSGVNNTHSENPSGHWREEMLVSQAHRSSYGGIIVTNSLRMLKEKRDLFYLISFIVHNTKPVGHQDLVGLVISML LLGDFSLVLLTLLQLYSISLVDVFLVLFILPLGILMPFPAGINALFSHGPRRSAGLARIYALWNVTSLINVVVAFICGYIHYNSQSPSSKKFPFQPWNIN MDESEWWIFPAGLVACKILQSQLVNWHIANLEIQDRSLYSNDFELFWQS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G11700			unknown protein		Potri.018G058300 [exp]	0	1
AT2G41520		TPR15	tetratricopeptide repeat 15, H...		Potri.006G047700 [exp]	1.00	0.8839
AT2G41700		AtABCA1, ABCA1	Arabidopsis thaliana ATP-bindi...		Potri.006G049300 [exp]	1.41	0.8586
AT4G00060		MEE44	maternal effect embryo arrest ...		Potri.014G066000 [exp]	3.46	0.8340
AT5G47490			RGPR-related (.1)		Potri.001G157800 [exp]	4.00	0.7893
AT1G70060		SNL4	SIN3-like 4 (.1)		Potri.010G038700 [exp]	7.00	0.7900
AT5G56890			Protein kinase superfamily pro...		Potri.018G068100 [exp]	7.07	0.7837
AT5G57160		ATLIG4	DNA ligase IV (.1)		Potri.018G141900 [exp]	7.74	0.7752	LIG4.1
AT3G47890			Ubiquitin carboxyl-terminal hy...		Potri.012G071900 [exp]	8.24	0.7721
AT5G05830			RING/FYVE/PHD zinc finger supe...		Potri.004G059200 [exp]	9.16	0.7478
AT3G28030		UVR1, UVH3	UV REPAIR DEFECTIVE 1, ULTRAVI...		Potri.017G070500 [exp]	9.38	0.8082

Compare expression of checked genes

Potri.018G058300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.