Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G19810 314 / 2e-105 C3HZnF AtOZF1 Oxidation-related Zinc Finger 1, CCCH-type zinc finger family protein (.1) AT4G29190 303 / 9e-101 C3HZnF AtOZF2 Arabidopsis thaliana oxidation-related zinc finger 2, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT2G25900 264 / 4e-86 C3HZnF ATTZF1, ATCTH A. THALIANA TANDEM ZINC FINGER PROTEIN 1, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) AT1G03790 197 / 4e-59 C3HZnF SOM SOMNUS, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT5G44260 188 / 4e-56 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT2G41900 191 / 2e-54 C3HZnF OXS2 OXIDATIVE STRESS 2, CCCH-type zinc finger protein with ARM repeat domain (.1) AT5G58620 184 / 2e-52 C3HZnF zinc finger (CCCH-type) family protein (.1) AT5G12850 184 / 7e-52 C3HZnF PEI1 CCCH-type zinc finger protein with ARM repeat domain (.1) AT5G07500 172 / 1e-51 C3HZnF PEI1 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT3G55980 172 / 4e-48 C3HZnF ATSZF1 salt-inducible zinc finger 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G234300 [exp] 567 / 0 AT4G29190 306 / 4e-102 Arabidopsis thaliana oxidation-related zinc finger 2, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Potri.017G013400 [exp] 219 / 7e-68 AT1G03790 265 / 2e-85 SOMNUS, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Potri.007G138300 [exp] 211 / 8e-65 AT1G03790 233 / 2e-73 SOMNUS, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Potri.006G053900 [exp] 194 / 1e-55 AT2G41900 791 / 0.0 OXIDATIVE STRESS 2, CCCH-type zinc finger protein with ARM repeat domain (.1) Potri.016G053700 [exp] 193 / 3e-55 AT2G41900 820 / 0.0 OXIDATIVE STRESS 2, CCCH-type zinc finger protein with ARM repeat domain (.1) Potri.006G053800 [exp] 193 / 4e-55 AT2G41900 817 / 0.0 OXIDATIVE STRESS 2, CCCH-type zinc finger protein with ARM repeat domain (.1) Potri.001G266700 [exp] 189 / 1e-53 AT2G41900 708 / 0.0 OXIDATIVE STRESS 2, CCCH-type zinc finger protein with ARM repeat domain (.1) Potri.001G252600 [exp] 185 / 3e-52 AT5G58620 572 / 0.0 zinc finger (CCCH-type) family protein (.1) Potri.009G046800 [exp] 184 / 5e-52 AT5G58620 553 / 0.0 zinc finger (CCCH-type) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012922 [exp] 328 / 3e-110 AT2G19810 387 / 9e-134 Oxidation-related Zinc Finger 1, CCCH-type zinc finger family protein (.1) Lus10035006 [exp] 321 / 1e-107 AT2G19810 380 / 2e-131 Oxidation-related Zinc Finger 1, CCCH-type zinc finger family protein (.1) Lus10033665 [exp] 204 / 8e-63 AT1G03790 240 / 6e-77 SOMNUS, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Lus10017708 [exp] 197 / 3e-60 AT1G03790 252 / 7e-82 SOMNUS, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Lus10028970 [exp] 189 / 3e-54 AT2G40140 615 / 0.0 \(SALT-INDUCIBLE ZINC FINGER 2, zinc finger (CCCH-type) family protein (.1), zinc finger (CCCH-type) family protein (.2) Lus10018621 [exp] 182 / 4e-54 AT1G03790 245 / 3e-78 SOMNUS, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Lus10019709 [exp] 188 / 6e-53 AT2G41900 759 / 0.0 OXIDATIVE STRESS 2, CCCH-type zinc finger protein with ARM repeat domain (.1) Lus10007493 [exp] 183 / 7e-52 AT2G40140 614 / 0.0 \(SALT-INDUCIBLE ZINC FINGER 2, zinc finger (CCCH-type) family protein (.1), zinc finger (CCCH-type) family protein (.2) Lus10040662 [exp] 165 / 7e-47 AT5G58620 341 / 2e-112 zinc finger (CCCH-type) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0537 [poplar] [flax] CCCH_zf PF00642 [poplar] [flax] zf-CCCH Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Representative CDS sequence Show only first row Show all	>Potri.018G058600.1 pacid=42802186 polypeptide=Potri.018G058600.1.p locus=Potri.018G058600 ID=Potri.018G058600.1.v4.1 annot-version=v4.1 ATGATGATCGGAGAACATCCTCATCACCATCCAAATCCCACCGTCCAAATCCCTCAATGGGACCCATACGATGACCAAACAACATCACCATCACCGTCAA CAATCCCCTCTTCTCCATTCACCAACTTCAATGCGCTCGACTCCCTGACGGCACTTCACCGTTACCTTCCGTCAAACGAGCCAGACCCATCCTTTGAAGA CGAGCTAGACTTACCAGTGGATGCGTTCTCATGCGATCACTTCCGTATGTACGTGTTCAAAGTGAGAAGGTGTGGACGTGGTCGGTCGCATGACTGGACT GAATGTCCGTACGCGCATCCTGGAGAGAAAGCTCGGCGAAGGGACCCACAAAGGTATCATTACTCTGGAACGGCCTGCCCTGAATTTCGGAAAGGCGGTT GCAAGAAAGGAGATTCTTGTGAGTTTGCTCACGGTGTCTTTGAGTGCTGGCTCCATCCTGCCCGTTACAGGACTCAGCCGTGTAAGGATGGACCTGCTTG TCGCCGCAGGGTCTGCTTTTTTGCTCACACTCCCGAACAGCTTAGGCTCCTTCCTCAGCATAGTCCTAAAGGAAACGGATCCGGGTCGTGGGAACTTGAT TTTGGGTCCCTGGTTATGCATCCTCTCGACTCTTACCTGACAAAAGCTGGGTCTTTTGTTTCATCTCCAACCTCGATTTTGACTTCTCCGCCAGTTTCTC CACCATCTGATTCGCCACCGATGTCACCAGTCAGTCCACAGGTGATCGGCGGGTCTGGATCCGGGTCTTTTAATTCCATGAGTGAGCTTCTTGCTTCTAT GCGGGGATTGCAGCTTGGGAAGATGAAAATAGGGTCTCCTGTTGGTTCTTGGGGGGTCCAATCCGGGTCTAGATTTGGGTCGCCACGTGGGTCATCGCTG CGACCCGGGTTCTGCAGCCTGCCTTCTACTCCTACTAGAACAATGGTAACTCGGTCTGGACTTGGCCAGCTGGATATCTGGGGAGATAGTAGTACTTGCG AGGAGGAGCCTGCAATGGAGAGGGTGGAGTCTGGGAGAGATTTGAGGGCGAAGATATATGCAAAGCTGAGTAAAGAGAACTCACTGGACCCTGATCGAGT TGAGTCTGCTGTTTCCGGGCCAGATGTTGGGTGGGTTTCCGAGTTGGTGAAGTGA
AA sequence Show only first row Show all	>Potri.018G058600.1 pacid=42802186 polypeptide=Potri.018G058600.1.p locus=Potri.018G058600 ID=Potri.018G058600.1.v4.1 annot-version=v4.1 MMIGEHPHHHPNPTVQIPQWDPYDDQTTSPSPSTIPSSPFTNFNALDSLTALHRYLPSNEPDPSFEDELDLPVDAFSCDHFRMYVFKVRRCGRGRSHDWT ECPYAHPGEKARRRDPQRYHYSGTACPEFRKGGCKKGDSCEFAHGVFECWLHPARYRTQPCKDGPACRRRVCFFAHTPEQLRLLPQHSPKGNGSGSWELD FGSLVMHPLDSYLTKAGSFVSSPTSILTSPPVSPPSDSPPMSPVSPQVIGGSGSGSFNSMSELLASMRGLQLGKMKIGSPVGSWGVQSGSRFGSPRGSSL RPGFCSLPSTPTRTMVTRSGLGQLDIWGDSSTCEEEPAMERVESGRDLRAKIYAKLSKENSLDPDRVESAVSGPDVGWVSELVK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G19810	C3HZnF	AtOZF1	Oxidation-related Zinc Finger ...		Potri.018G058600 [exp]	0	1
AT4G37260	MYB	ATMYB73	myb domain protein 73 (.1)		Potri.005G142600 [exp]	1.41	0.7963
AT3G48530		KING1	SNF1-related protein kinase re...		Potri.015G094700 [exp]	2.00	0.7958
AT3G22970			Protein of unknown function (D...		Potri.010G080600 [exp]	2.44	0.7926
AT3G47160			RING/U-box superfamily protein...		Potri.009G045400 [exp]	3.16	0.7696
AT1G33055			unknown protein		Potri.001G452500 [exp]	3.87	0.7859
AT1G75810			unknown protein		Potri.002G020200 [exp]	4.00	0.7879
AT4G24240	WRKY	ATWRKY7, WRKY7	WRKY DNA-binding protein 7 (.1...		Potri.005G141400 [exp]	4.12	0.7221	Pt-WRKY15.2
AT2G01260			Protein of unknown function (D...		Potri.010G120700 [exp]	4.47	0.7123
AT2G24100		ASG1	ALTERED SEED GERMINATION 1, un...		Potri.003G185050 [exp]	5.65	0.7742
AT2G03890		UBDKGAMMA7, ATP...	UBIQUITIN-LIKE DOMAIN KINASE G...		Potri.008G112200 [exp]	6.63	0.7368

Compare expression of checked genes

Potri.018G058600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.