Plant FIBer expression Database

Potri.018G058900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G25910 536 / 0 3'-5' exonuclease domain-containing protein / K homology domain-containing protein / KH domain-containing protein (.1.2)
AT1G54440 46 / 4e-05 Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain (.1.2)
AT5G35910 44 / 0.0002 Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G234000
[exp]
618 / 0 AT2G25910 486 / 8e-174 3'-5' exonuclease domain-containing protein / K homology domain-containing protein / KH domain-containing protein (.1.2)
Potri.013G062800
[exp]
45 / 5e-05 AT5G35910 791 / 0.0 Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain (.1)
Potri.019G038701
[exp]
44 / 0.0002 AT5G35910 846 / 0.0 Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10031563
[exp]
47 / 3e-05 AT2G32415 1039 / 0.0 Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0007 KH PF00013 KH_1 KH domain
CL0219 RNase_H PF01612 DNA_pol_A_exo1 3'-5' exonuclease
Representative CDS sequence
>Potri.018G058900.4 pacid=42801201 polypeptide=Potri.018G058900.4.p locus=Potri.018G058900 ID=Potri.018G058900.4.v4.1 annot-version=v4.1
ATGGCTTCCTCCTCCTCTTCTCACCAGACTCACACTCCTCTCCCTTCCGACCCCGGCGGTGGTAAACCACTAGATCATGAGGTTCCGATACATGTTGTGA
CCGAGCCTTCTCAACTTCCGGCCGAGTTCCTTAACCCTTCAGCCGCGAAGCAATTGATCATTGGGTTTGACTGTGAGGGTGTTGATCTTTGTCGCCATGG
AACTCTCTGTATTATGCAGCTTGCTTTTCCGGATGCTATATATTTGGTCGATGCCATTAAGGGTGGAGAGTCTCTCATCAGAGCATGTAAGCCTGCGCTC
GAGTCTAGTCACATCACAAAAGTTATCCATGACTGCAAACGGGATAGCGAGGCATTATATTTTCAGTTTGGCATCAAGTTGCACAATGTTGTTGATACCC
AGATTGCTTATTCTCAGATAGAGGAGCAAGAAGGACGGACTAGATTGCCTGATGACTATATATCATTTGTTGGCCTCCTTGCAGATCCACGCTATTGTGG
CATATCTTATCTGGAGAAGGAAGAGGTTCGTGTTCTCCTCCGACAGGATCCTATGTTCTGGACATACAGGCCATTATCTGAAATGATGATCCATGCAGCT
GCAGATGATGTTCGCTTTCTTCTCCGCATCTATTATAAGATGATGGAAAAGCTCAACCAGAGATCTTTATGGTATCTTGCAGTTCGTGGGGTGTTGTATT
GTCGATGCTTCTGCATCAATGAGAATGATTATGCTGATTGGCCCCATATCCCTCCTATTCCAGATAACCTCATCATCGAGGATAATGCTCCTGAAGAGGA
AATCCTTTCTGTTCTTGATGTTCCCCCAGGAAAGATGGGACGTGTTATTGGAAGACGAGGAGCATCCATTTTGTCAGTAAAGGAATCTTGCAACGCGGAG
ATTTTCATTGGAGGTGCAAAGGGTCCAACTGACAAGGTATTCATAGTAGGACCGGTGAAACAAGTGAGGAAAGCTGAAGCCATGTTGAGGGGGAAAATGC
TGGATATATTTTAG
AA sequence
>Potri.018G058900.4 pacid=42801201 polypeptide=Potri.018G058900.4.p locus=Potri.018G058900 ID=Potri.018G058900.4.v4.1 annot-version=v4.1
MASSSSSHQTHTPLPSDPGGGKPLDHEVPIHVVTEPSQLPAEFLNPSAAKQLIIGFDCEGVDLCRHGTLCIMQLAFPDAIYLVDAIKGGESLIRACKPAL
ESSHITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSQIEEQEGRTRLPDDYISFVGLLADPRYCGISYLEKEEVRVLLRQDPMFWTYRPLSEMMIHAA
ADDVRFLLRIYYKMMEKLNQRSLWYLAVRGVLYCRCFCINENDYADWPHIPPIPDNLIIEDNAPEEEILSVLDVPPGKMGRVIGRRGASILSVKESCNAE
IFIGGAKGPTDKVFIVGPVKQVRKAEAMLRGKMLDIF

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G25910 3'-5' exonuclease domain-conta... Potri.018G058900
[exp]
0 1
AT3G05675 BTB/POZ domain-containing prot... Potri.006G202900
[exp]
1.73 0.7788
AT1G16650 S-adenosyl-L-methionine-depend... Potri.007G065300
[exp]
2.82 0.8020
AT3G13340 Transducin/WD40 repeat-like su... Potri.001G471800
[exp]
2.82 0.8000
AT4G19150 Ankyrin repeat family protein ... Potri.001G130500
[exp]
3.16 0.7412
AT4G38960 CO B-box type zinc finger family ... Potri.004G162600
[exp]
5.29 0.7677
AT5G03415 E2F_DP ATDPB, DPB Transcription factor DP (.1.2) Potri.016G093200
[exp]
9.74 0.7036
AT5G22400 Rho GTPase activating protein ... Potri.016G078200
[exp]
10.81 0.7468
AT2G01460 P-loop containing nucleoside t... Potri.010G111900
[exp]
13.74 0.7502
AT1G14870 AtPCR2, PCR2 PLANT CADMIUM RESISTANCE 2 (.1... Potri.008G132900
[exp]
14.49 0.6857
AT4G35740 ATRECQ3, RECQL3 A. THALIANA RECQ HELICASE 3, D... Potri.005G107400
[exp]
14.83 0.7403

Potri.018G058900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.