Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11730 548 / 0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT5G25970 502 / 8e-179 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT3G21310 477 / 8e-169 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G51770 459 / 2e-161 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT1G10280 380 / 2e-130 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G68390 367 / 4e-125 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT5G16170 345 / 8e-117 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G73810 327 / 1e-109 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G68380 311 / 9e-104 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G10880 315 / 4e-102 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G233400 [exp] 694 / 0 AT5G11730 557 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.001G195900 [exp] 537 / 0 AT3G21310 504 / 8e-180 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.010G121900 [exp] 394 / 6e-136 AT5G11730 409 / 1e-141 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.004G097700 [exp] 369 / 1e-126 AT5G16170 452 / 6e-159 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.015G045500 [exp] 369 / 3e-126 AT5G16170 394 / 2e-135 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.010G121800 [exp] 369 / 3e-126 AT1G68390 399 / 1e-137 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.004G228100 [exp] 369 / 4e-126 AT1G10280 512 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.015G045400 [exp] 367 / 1e-125 AT1G68390 390 / 2e-134 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.003G001700 [exp] 367 / 2e-125 AT1G10280 543 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005504 [exp] 554 / 0 AT5G11730 499 / 1e-177 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10005505 [exp] 554 / 0 AT5G11730 499 / 1e-177 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10007457 [exp] 538 / 0 AT5G11730 489 / 1e-170 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10003499 [exp] 483 / 5e-171 AT3G21310 503 / 3e-179 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10009738 [exp] 479 / 2e-169 AT3G21310 511 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10035828 [exp] 374 / 2e-127 AT1G68390 401 / 7e-138 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10036610 [exp] 374 / 3e-127 AT1G68390 404 / 3e-139 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10024468 [exp] 367 / 2e-125 AT1G10280 524 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10002989 [exp] 365 / 1e-124 AT1G10280 525 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10040972 [exp] 355 / 1e-120 AT1G10280 529 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [poplar] [flax] GT-A PF02485 [poplar] [flax] Branch Core-2/I-Branching enzyme
Representative CDS sequence Show only first row Show all	>Potri.018G059100.1 pacid=42802138 polypeptide=Potri.018G059100.1.p locus=Potri.018G059100 ID=Potri.018G059100.1.v4.1 annot-version=v4.1 ATGCAATCAAGAGTTGTTCCATTAGAGGAAGGGAAGGACCCTGCAGTTTCGATCAAAGCAAGCCAATCCAAGCACTCTCCAATAAGGTTACTCCAGTTTT TTTTGCTGTTTTTAGCTGTATGCATCTCCTTTTCAATCATCAGTATGTATACAATCAAGCGTTCTGGAGTTCAGACTGCAGGGACAACTGTTAAGCCTGC TTTTAAGCATTGCTTTGATGAACCGAATACTTTGGATCGTTGGATTAGGCGTCCATTGAACCTGCTCCATAAAATGAGTGATGAGGAGCTCTTTTGGAGG GCTTCTTTTGTTCCTCGGATAAAGAAGTATCCCTTCAAGAGAGTTCCTAAGATTGCGTTTATGTTTCTGACAAAGGGGCCATTGCCTCTGGCGCCTCTTT GGGAAAAGTTTTTGAAGGGGCACGAAGGGCTCTATTCGGTCTATATTCATTCGTTGCCAACATTTGAAGCCAAATTTCCACCTTCTTCAGTTTTCCATCG GAGACAAATCCCAAGTCAGATTTCTGAGTGGGGTAAGATGAGTATGTGTGATGCTGAACGAAGACTCCTTGCCAATGCATTGCTCGATATCTTGAATGAG CGGTTTGTTCTGGTGTCCGAATCTTGCATTCCTCTCTTTAATTTTACTTTCGTGTATGGATACATAATGAGATCCAAGCATAGCTTCATTGGTGCATTTG ACGACCATGGGCCATATGGGAGAGGACGGTATAATGAGAATATGGCACCTGAGGTGAATATTACCAACTGGCGCAAAGGATCTCAATGGTTTGAGATTAA CCGAAAGCTTGCAGTCAACATAGTGGAAGATACTACATTTTACCCAAAATTTGAGGAATTCTGTAAACCGCATTGTTATGTTGATGAACATTATTTCCCC ACCATGTTGACCGTTCGAACAGCACCTCTCTTAGCGAACAGAACCCTTACCTGGGTGGACTGGTCAAGGGGTGGAGCTCACCCAGCTACCTTCGGAAGAG CGGACATAAAAGAGGAGTTCTTCAAAAAGGTTCATGAAGATAAGCATTGCATTTACAATAATCAATCCACTTCAATCTGTTTTCTTTTTGCGAGGAAATT TGCACCGAGTGCTTTGGAACCTCTGTTACACATATCACGAAACGTTTTGGGATTTTGA
AA sequence Show only first row Show all	>Potri.018G059100.1 pacid=42802138 polypeptide=Potri.018G059100.1.p locus=Potri.018G059100 ID=Potri.018G059100.1.v4.1 annot-version=v4.1 MQSRVVPLEEGKDPAVSIKASQSKHSPIRLLQFFLLFLAVCISFSIISMYTIKRSGVQTAGTTVKPAFKHCFDEPNTLDRWIRRPLNLLHKMSDEELFWR ASFVPRIKKYPFKRVPKIAFMFLTKGPLPLAPLWEKFLKGHEGLYSVYIHSLPTFEAKFPPSSVFHRRQIPSQISEWGKMSMCDAERRLLANALLDILNE RFVLVSESCIPLFNFTFVYGYIMRSKHSFIGAFDDHGPYGRGRYNENMAPEVNITNWRKGSQWFEINRKLAVNIVEDTTFYPKFEEFCKPHCYVDEHYFP TMLTVRTAPLLANRTLTWVDWSRGGAHPATFGRADIKEEFFKKVHEDKHCIYNNQSTSICFLFARKFAPSALEPLLHISRNVLGF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G11730			Core-2/I-branching beta-1,6-N-...		Potri.018G059100 [exp]	0	1
AT1G19170			Pectin lyase-like superfamily ...		Potri.018G062700 [exp]	2.00	0.8690
AT5G17920		ATCIMS, ATMETS,...	methionine synthesis 1, COBALA...		Potri.013G061800 [exp]	4.00	0.8179	Pt-CIMS.2
AT2G07180			Protein kinase superfamily pro...		Potri.006G079600 [exp]	6.92	0.7973
AT3G62660		GATL7	galacturonosyltransferase-like...		Potri.002G200200 [exp]	7.93	0.7951
AT4G36750			Quinone reductase family prote...		Potri.005G126200 [exp]	8.83	0.7598
AT3G47570			Leucine-rich repeat protein ki...		Potri.008G033900 [exp]	8.94	0.7888
AT3G53260		PAL2, ATPAL2	phenylalanine ammonia-lyase 2 ...		Potri.010G224100 [exp]	8.94	0.8029	PAL.3
AT1G09610			Protein of unknown function (D...		Potri.019G076300 [exp]	9.16	0.7990
AT2G31930			unknown protein		Potri.001G232200 [exp]	11.09	0.8066
AT1G32100		ATPRR1	pinoresinol reductase 1 (.1)		Potri.003G100200 [exp]	14.89	0.8001	PCBERp8

Compare expression of checked genes

Potri.018G059100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.