Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	GAMMA-VPE.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32940 752 / 0 GAMMAVPE, GAMMA-VPE gamma vacuolar processing enzyme (.1) AT2G25940 733 / 0 ALPHAVPE, ALPHA-VPE alpha-vacuolar processing enzyme (.1) AT1G62710 565 / 0 BETAVPE, BETA-VPE beta vacuolar processing enzyme (.1) AT3G20210 479 / 7e-167 DELTAVPE, DELTA-VPE delta vacuolar processing enzyme (.1.2) AT1G08750 95 / 5e-21 Peptidase C13 family (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G232900 [exp] 914 / 0 AT4G32940 742 / 0.0 gamma vacuolar processing enzyme (.1) Potri.003G113300 [exp] 586 / 0 AT1G62710 704 / 0.0 beta vacuolar processing enzyme (.1) Potri.001G119800 [exp] 581 / 0 AT1G62710 720 / 0.0 beta vacuolar processing enzyme (.1) Potri.008G003400 [exp] 548 / 0 AT2G25940 534 / 0.0 alpha-vacuolar processing enzyme (.1) Potri.019G014000 [exp] 96 / 2e-21 AT1G08750 608 / 0.0 Peptidase C13 family (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007450 [exp] 819 / 0 AT4G32940 754 / 0.0 gamma vacuolar processing enzyme (.1) Lus10024446 [exp] 776 / 0 AT4G32940 717 / 0.0 gamma vacuolar processing enzyme (.1) Lus10024599 [exp] 566 / 0 AT1G62710 709 / 0.0 beta vacuolar processing enzyme (.1) Lus10032236 [exp] 563 / 0 AT1G62710 712 / 0.0 beta vacuolar processing enzyme (.1) Lus10033344 [exp] 500 / 9e-175 AT2G25940 473 / 3e-164 alpha-vacuolar processing enzyme (.1) Lus10034798 [exp] 294 / 2e-96 AT2G25940 260 / 9e-84 alpha-vacuolar processing enzyme (.1) Lus10034797 [exp] 102 / 3e-26 AT3G20210 104 / 4e-28 delta vacuolar processing enzyme (.1.2) Lus10006570 [exp] 97 / 1e-21 AT1G08750 578 / 0.0 Peptidase C13 family (.1.2.3) Lus10005520 [exp] 96 / 2e-21 AT1G08750 582 / 0.0 Peptidase C13 family (.1.2.3) Lus10006571 [exp] 60 / 1e-09 AT1G08750 460 / 1e-163 Peptidase C13 family (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0093 [poplar] [flax] Peptidase_CD PF01650 [poplar] [flax] Peptidase_C13 Peptidase C13 family
Representative CDS sequence Show only first row Show all	>Potri.018G059400.1 pacid=42801390 polypeptide=Potri.018G059400.1.p locus=Potri.018G059400 ID=Potri.018G059400.1.v4.1 annot-version=v4.1 ATGACGGGACTCGCTACCGGCGCAATTTTTCTTCTTATTTCTTTATGTGGTATCGCCGCCGCTGGCCGAGACACCGTTGGTGACGTTCTTCGGTTGCCAT CGGAGGCTTCCAGGTTTTTCCATAACGATGATAATAGTGATGATGATTCAACTGGAACTAGATGGGCGATCCTCCTTGCCGGATCTAACGGTTACTGGAA TTACAGGCATCAGGCAGATGTTTTTCATGCATATCAACTGCTGAGAAAAGGTGGATTAAAGGAAGAAAATATAATTGTTTTCATGTATGATGACATTGCT TATAACTCAGAGAATCCAAGGCGTGGAGTCATCATTAACAGTCCTCAAGGAGAAGATGTTTATAAAGGAGTTCCAAAGGATTATACCGGTGAAGATGTCA CTGTTGGAAACTTTTTTGCTGCTATTCTTGGAAACAAGACTGCTCTTACTGGGGGTAGTGGAAAAGTCGTTGATAGTGGCCCCAATGATCATATTTTCAT TTACTATACTGATCATGGAGGTCCTGGGGTGCTAGGTATGCCTACCAATCCTTACCTCTATGCTGATGATTTGATTGATGTCTTAAAAAAGAAGCATGCA TCTGGGACCTATAAAAGCTTGGTGTTTTATCTTGAAGCCTGTGAATCCGGAAGCATCTTTGAGGGTCTTCTTCCTCAAGGTTTAAATATCTATGCAACCA CAGCATCAAATGCGGAAGAGAGCAGTTGGGGAACCTATTGTCCCGGAGAGAATCCTAGCCCTCCCCCAGAATATGAAACCTGTTTGGGTGACTTGTACAG TGTTGCTTGGATGGAGGATAGCGACATACACAATTTACAGACGGAAACTTTGCACCAGCAATATGAACTGGTAAAAAGGAGGACTTCCAATGACAATTCT CCCTATGGTTCCCATGTCATGCAATATGGTGATGTAGGACTTAGCAAGGACAACATCTTCCTGTATATGGGTACAAACCCTGCTAATGATAACTTCACTT TCATGGATGAGAACTTGTTGAGGCCTCGTTCTAAAGCTGTTAATCAGCGTGATGCTGATCTTGTCCACTTCTGGGATAAGTACCGCAAGGCCCCCGAAGG CTCTTCTAGGAAGGTTGAAGCTCAGAAGCAATTTGTTGAAGCAATGTCACATAGAATGCATATAGACCACAGCATAAAACTTATTGGGAAGCTCCTTTTT GGAATTGAAAAGGCCTCAGAGGTGTTGAATGCCATCCGTCCTGCTGGGCAACCTCTTGTAGATGACTGGGACTGCCTTAAAACACTGGTGAGGACTTTTG AAACACATTGTGGATCCGTATCCCAGTATGGGATGAAACACATGCGATCTCTTGCTAACCTTTGCAATGCTGGAATTGGAAAGGAACAGATGGCCGAGGC ATCGGCACAAGCTTGTGTCAGCTTTCCTTCTGGTCCATGGAGCACTCTTCACAAAGGGTTCAGCGCATAA
AA sequence Show only first row Show all	>Potri.018G059400.1 pacid=42801390 polypeptide=Potri.018G059400.1.p locus=Potri.018G059400 ID=Potri.018G059400.1.v4.1 annot-version=v4.1 MTGLATGAIFLLISLCGIAAAGRDTVGDVLRLPSEASRFFHNDDNSDDDSTGTRWAILLAGSNGYWNYRHQADVFHAYQLLRKGGLKEENIIVFMYDDIA YNSENPRRGVIINSPQGEDVYKGVPKDYTGEDVTVGNFFAAILGNKTALTGGSGKVVDSGPNDHIFIYYTDHGGPGVLGMPTNPYLYADDLIDVLKKKHA SGTYKSLVFYLEACESGSIFEGLLPQGLNIYATTASNAEESSWGTYCPGENPSPPPEYETCLGDLYSVAWMEDSDIHNLQTETLHQQYELVKRRTSNDNS PYGSHVMQYGDVGLSKDNIFLYMGTNPANDNFTFMDENLLRPRSKAVNQRDADLVHFWDKYRKAPEGSSRKVEAQKQFVEAMSHRMHIDHSIKLIGKLLF GIEKASEVLNAIRPAGQPLVDDWDCLKTLVRTFETHCGSVSQYGMKHMRSLANLCNAGIGKEQMAEASAQACVSFPSGPWSTLHKGFSA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G32940		GAMMAVPE, GAMMA...	gamma vacuolar processing enzy...		Potri.018G059400 [exp]	0	1	GAMMA-VPE.1
AT1G62680			Pentatricopeptide repeat (PPR)...		Potri.019G099701 [exp]	13.74	0.8052
					Potri.001G076400 [exp]	32.83	0.7880
AT2G45140		PVA12	plant VAP homolog 12 (.1)		Potri.010G031601 [exp]	33.13	0.7880
					Potri.003G098500 [exp]	42.07	0.7818
AT5G04040		SDP1	SUGAR-DEPENDENT1, Patatin-like...		Potri.016G041000 [exp]	44.97	0.7079
					Potri.010G219950 [exp]	45.09	0.7840
AT3G07230			wound-responsive protein-relat...		Potri.014G191300 [exp]	45.23	0.7816
AT5G05800			unknown protein		Potri.017G072700 [exp]	50.07	0.7789
AT1G12520		ATCCS, CCS1	copper chaperone for SOD1 (.1....		Potri.003G118400 [exp]	51.43	0.7505
AT3G19230			Leucine-rich repeat (LRR) fami...		Potri.010G213101 [exp]	63.31	0.7743

Compare expression of checked genes

Potri.018G059400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.