Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33110 586 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT4G33120 558 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT3G23530 91 / 8e-20 Cyclopropane-fatty-acyl-phospholipid synthase (.1) AT3G23510 90 / 2e-19 Cyclopropane-fatty-acyl-phospholipid synthase (.1) AT3G23480 85 / 6e-18 Cyclopropane-fatty-acyl-phospholipid synthase (.1.2) AT3G23470 84 / 1e-17 Cyclopropane-fatty-acyl-phospholipid synthase (.1) AT3G18000 54 / 9e-08 XPL1, NMT1, XIPOTL1, PEAMT XIPOTL 1, N-METHYLTRANSFERASE 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G48600 50 / 2e-06 AtPMEAMT phosphoethanolamine N-methyltransferase, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT1G73600 50 / 2e-06 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT5G13710 45 / 4e-05 CPH, SMT1 CEPHALOPOD, sterol methyltransferase 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G067800 [exp] 104 / 1e-24 AT3G23510 650 / 0.0 Cyclopropane-fatty-acyl-phospholipid synthase (.1) Potri.010G067567 [exp] 101 / 1e-23 AT3G23510 640 / 0.0 Cyclopropane-fatty-acyl-phospholipid synthase (.1) Potri.010G067600 [exp] 99 / 6e-23 AT3G23510 647 / 0.0 Cyclopropane-fatty-acyl-phospholipid synthase (.1) Potri.010G067700 [exp] 99 / 7e-23 AT3G23530 652 / 0.0 Cyclopropane-fatty-acyl-phospholipid synthase (.1) Potri.008G170300 [exp] 97 / 1e-21 AT3G23510 1408 / 0.0 Cyclopropane-fatty-acyl-phospholipid synthase (.1) Potri.010G067900 [exp] 91 / 7e-20 AT3G23530 1392 / 0.0 Cyclopropane-fatty-acyl-phospholipid synthase (.1) Potri.012G047400 [exp] 52 / 5e-07 AT1G48600 862 / 0.0 phosphoethanolamine N-methyltransferase, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.015G039000 [exp] 50 / 2e-06 AT1G48600 862 / 0.0 phosphoethanolamine N-methyltransferase, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.001G263700 [exp] 46 / 2e-05 AT5G13710 587 / 0.0 CEPHALOPOD, sterol methyltransferase 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014230 [exp] 570 / 0 AT4G33110 508 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10022684 [exp] 565 / 0 AT4G33110 516 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10011784 [exp] 97 / 8e-22 AT3G23530 1253 / 0.0 Cyclopropane-fatty-acyl-phospholipid synthase (.1) Lus10023741 [exp] 96 / 2e-21 AT3G23530 1294 / 0.0 Cyclopropane-fatty-acyl-phospholipid synthase (.1) Lus10009056 [exp] 49 / 3e-06 AT1G73600 773 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10018010 [exp] 49 / 5e-06 AT3G18000 843 / 0.0 XIPOTL 1, N-METHYLTRANSFERASE 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10031348 [exp] 48 / 7e-06 AT3G18000 843 / 0.0 XIPOTL 1, N-METHYLTRANSFERASE 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10009537 [exp] 47 / 9e-06 AT1G64970 453 / 3e-160 VITAMIN E DEFICIENT 4, gamma-tocopherol methyltransferase (.1) Lus10042006 [exp] 48 / 1e-05 AT3G18000 841 / 0.0 XIPOTL 1, N-METHYLTRANSFERASE 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10020357 [exp] 46 / 3e-05 AT1G64970 434 / 7e-154 VITAMIN E DEFICIENT 4, gamma-tocopherol methyltransferase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF13847 [poplar] [flax] Methyltransf_31 Methyltransferase domain
Representative CDS sequence Show only first row Show all	>Potri.018G060000.1 pacid=42801067 polypeptide=Potri.018G060000.1.p locus=Potri.018G060000 ID=Potri.018G060000.1.v4.1 annot-version=v4.1 ATGGAGAGATTAATGCAGGTGCCTTATGAAGCAACGGTGAAGGTGATGTTAGCATCTCTGGAAAGAAATTTGCTACCAGATGCGGTGATCAGGAGGCTCA CTCGCATGCTCTCGGCAGACCGTCTTCGTTCTTGCTACAAGACATCCTCTGAACTCCAGCTAGCTGACCTTCTCCAATTCGTTCATTCTCTAAAAGAAAT GCCTATAGCTATCAAGACTGATAAGCCAAAAACTCAACATTATGAATTACCAACCTCTTTCTTTAAGCTGGTCCTCGGGAAAAATCTCAAATACAGCTGT TGTTATTTTTCTGATAAATCGAACACCTTGGAAGATGCTGAGAAAGCAATGTTGGAGCTGTACTGCGAAAGGTCACAGTTAAAAGATGGACACACTGTCC TTGACGTTGGATGTGGCTGGGGGTCGCTCTCTTTATACATTGCCCAAAAGTACAGTAACTGTAAAATTACTGGGATTTGCAATTCAACAACACAGAAAGT ACACATTGATGAGCAGTGCCGGGATCTTCAGCTGCAGAATGTGGAGATCATTGTTGCAGACATTAGCACATTTGAAATGCAGGCATCCTATGACCGTATA TACTCCATTGAAATGTTTGAGCATATGAAGAATTATGGAGATCTTCTTAACAAGATATCCAAGTGGATGAAACAAGATGGCCTTCATTTTGTTCATTATT TCTGTCACAAGCAATTTGCTTACCACTTTGAGGATGTTAATGAAGATGACTGGATTACTAGGTATTTCTTCACAGGAGGTACAATGCCTTCTGCAAATCT GTTACTTTATTTCCAGGATGATGTTTCCATTGTTGATCATTGGCTTGTGAATGGGAAACATTATTCACAGACAAGTGAGGAGTGGCTCAAAAGAATGGAC CGGAACCTAGCTGCCATTAAGCCAATAATGGAGTCAACCTATGGTAAAGATCAAGCTGTTAAGTGGACTGTTTACTGGAGAACATTCTTCATTGCTGTTG CAGAACTCTTTGGATACAACAATGGAGAAGAGTGGATGGTTGCACATTTCCTTTTTAATAAAAAATGA
AA sequence Show only first row Show all	>Potri.018G060000.1 pacid=42801067 polypeptide=Potri.018G060000.1.p locus=Potri.018G060000 ID=Potri.018G060000.1.v4.1 annot-version=v4.1 MERLMQVPYEATVKVMLASLERNLLPDAVIRRLTRMLSADRLRSCYKTSSELQLADLLQFVHSLKEMPIAIKTDKPKTQHYELPTSFFKLVLGKNLKYSC CYFSDKSNTLEDAEKAMLELYCERSQLKDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSTTQKVHIDEQCRDLQLQNVEIIVADISTFEMQASYDRI YSIEMFEHMKNYGDLLNKISKWMKQDGLHFVHYFCHKQFAYHFEDVNEDDWITRYFFTGGTMPSANLLLYFQDDVSIVDHWLVNGKHYSQTSEEWLKRMD RNLAAIKPIMESTYGKDQAVKWTVYWRTFFIAVAELFGYNNGEEWMVAHFLFNKK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G33110			S-adenosyl-L-methionine-depend...		Potri.018G060000 [exp]	0	1
AT5G42765			unknown protein		Potri.014G196800 [exp]	9.16	0.9172
AT4G13590			Uncharacterized protein family...		Potri.001G053600 [exp]	9.38	0.9067
AT1G11290		CRR22	CHLORORESPIRATORY REDUCTION22,...		Potri.005G151200 [exp]	18.33	0.9063
AT1G48350		EMB3105	EMBRYO DEFECTIVE 3105, Ribosom...		Potri.010G005000 [exp]	19.20	0.9075
AT4G01310			Ribosomal L5P family protein (...		Potri.002G154600 [exp]	20.59	0.9097
AT5G46110		TPT, APE2	triose-phosphate ⁄ phosp...		Potri.004G048900 [exp]	22.69	0.9065	Pt-APE2.2
AT1G11290		CRR22	CHLORORESPIRATORY REDUCTION22,...		Potri.005G155000 [exp]	25.90	0.8996
AT4G15920		SWEET17, AtSWEE...	Nodulin MtN3 family protein (....		Potri.008G220600 [exp]	26.15	0.8897
AT4G14890		FdC2	ferredoxin C 2, 2Fe-2S ferredo...		Potri.008G153200 [exp]	29.25	0.9042
AT4G14550	AUX_IAA	SLR, IAA14	SOLITARY ROOT, indole-3-acetic...		Potri.010G078300 [exp]	30.16	0.8630	Pt-IAA14.2

Compare expression of checked genes

Potri.018G060000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.