Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G72770 493 / 6e-171 HAB1 HYPERSENSITIVE TO ABA1, homology to ABI1 (.1.2.3) AT1G17550 483 / 8e-167 HAB2 homology to ABI2 (.1) AT5G57050 433 / 2e-148 AtABI2, ABI2 ABA INSENSITIVE 2, Protein phosphatase 2C family protein (.1.2) AT4G26080 427 / 5e-146 AtABI1, ABI1 ABA INSENSITIVE 1, Protein phosphatase 2C family protein (.1) AT1G07430 250 / 4e-77 HAI2 highly ABA-induced PP2C gene 2 (.1) AT2G29380 246 / 1e-76 HAI3 highly ABA-induced PP2C gene 3 (.1) AT3G11410 234 / 9e-72 ATPP2CA, AHG3 ARABIDOPSIS THALIANA PROTEIN PHOSPHATASE 2CA, protein phosphatase 2CA (.1) AT5G59220 228 / 6e-69 SAG113, HAI1 senescence associated gene 113, highly ABA-induced PP2C gene 1 (.1) AT5G51760 225 / 5e-68 AHG1 ABA-hypersensitive germination 1, Protein phosphatase 2C family protein (.1) AT5G53140 164 / 3e-45 Protein phosphatase 2C family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G224600 [exp] 988 / 0 AT1G72770 503 / 1e-174 HYPERSENSITIVE TO ABA1, homology to ABI1 (.1.2.3) Potri.003G044200 [exp] 605 / 0 AT1G72770 576 / 0.0 HYPERSENSITIVE TO ABA1, homology to ABI1 (.1.2.3) Potri.006G164632 [exp] 299 / 1e-96 AT4G26080 300 / 1e-98 ABA INSENSITIVE 1, Protein phosphatase 2C family protein (.1) Potri.015G018800 [exp] 253 / 2e-79 AT1G07430 236 / 2e-74 highly ABA-induced PP2C gene 2 (.1) Potri.008G059200 [exp] 247 / 1e-76 AT1G07430 362 / 1e-122 highly ABA-induced PP2C gene 2 (.1) Potri.010G199600 [exp] 236 / 3e-72 AT3G11410 386 / 9e-133 ARABIDOPSIS THALIANA PROTEIN PHOSPHATASE 2CA, protein phosphatase 2CA (.1) Potri.012G131800 [exp] 234 / 7e-72 AT5G51760 332 / 3e-111 ABA-hypersensitive germination 1, Protein phosphatase 2C family protein (.1) Potri.009G037300 [exp] 235 / 2e-71 AT1G07430 401 / 2e-137 highly ABA-induced PP2C gene 2 (.1) Potri.015G133900 [exp] 234 / 2e-71 AT5G51760 338 / 1e-113 ABA-hypersensitive germination 1, Protein phosphatase 2C family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026447 [exp] 697 / 0 AT1G72770 465 / 1e-159 HYPERSENSITIVE TO ABA1, homology to ABI1 (.1.2.3) Lus10025000 [exp] 669 / 0 AT1G72770 467 / 1e-160 HYPERSENSITIVE TO ABA1, homology to ABI1 (.1.2.3) Lus10012962 [exp] 290 / 7e-93 AT4G26080 315 / 2e-104 ABA INSENSITIVE 1, Protein phosphatase 2C family protein (.1) Lus10040738 [exp] 246 / 3e-75 AT1G07430 429 / 7e-148 highly ABA-induced PP2C gene 2 (.1) Lus10016493 [exp] 244 / 7e-75 AT1G07430 421 / 2e-145 highly ABA-induced PP2C gene 2 (.1) Lus10034965 [exp] 234 / 5e-72 AT1G72770 249 / 3e-79 HYPERSENSITIVE TO ABA1, homology to ABI1 (.1.2.3) Lus10004703 [exp] 234 / 3e-71 AT2G29380 392 / 3e-135 highly ABA-induced PP2C gene 3 (.1) Lus10040270 [exp] 228 / 7e-69 AT2G29380 390 / 1e-134 highly ABA-induced PP2C gene 3 (.1) Lus10019017 [exp] 202 / 7e-60 AT2G29380 280 / 3e-92 highly ABA-induced PP2C gene 3 (.1) Lus10003399 [exp] 190 / 2e-56 AT2G29380 252 / 2e-82 highly ABA-induced PP2C gene 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [poplar] [flax] PP2C PF00481 [poplar] [flax] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Potri.018G060300.3 pacid=42800796 polypeptide=Potri.018G060300.3.p locus=Potri.018G060300 ID=Potri.018G060300.3.v4.1 annot-version=v4.1 ATGGAGGAGATGTACCGGGCGGTTGCAGTGCCATTTAGAGTAGGTAATTCAGTCTGTGAGAGTCCGTCCTTAGATACCCATATGGATATCACAAGACTTT TAATGGCAGACACAGCTAGCTTATTATCTGATACTGTAACTAAGGTTTCTACTGTGGGGAATAAGGATTGTAATTGTTGTGATTTAGATGATGAAGTTAA AGATACAGCAGTGCAAGCTCCTAAAGAGGACAAGGGAGGAGGAGGAGGCCCTTTGTTGGATATGATCTCTGAAAATGAAAGAAATTGGGTTGTTGGTGAT GATGTGATAACACGGGATAGCGAGGAGGACGATTCTTTGTCGTTGGAGGGTGATCCAATTCTTGATTGTTCTTGTTCTCTGTCAGTGGCCAGTGAGACAA GTAGCTTATGTGGAGAGGATTTCTTGAGTTTTGAGGCCACCTTTGAGGTAGGAACACCAAGTTCTGTAGATATTGAAAAGAGTGCTGGTGGTGTTGATAT TATTCCCAAGACAGCAGATTTGGGGGATTTGAATGTTGACGCCATCGTTAGCGATCCCCTTTCTGTGGCAGGAATTGTTGAGGAAGAGGTTGGAGATGGA TCTGATGCAAAGACATCCGCTGTGGTACCTAAGTTGACTCTGGAAAGAGGGGCCAGTGGTACAATCTCAAGAAGTGTTTTTGAAGTGGACTACATACCCC TTTGGGGATTTACGTCTGTGTGTGGAAGGAGACCAGAGATGGAAGATGCAGTTGCTGCTGTGCCTTATTTTTTGAAAATTCATATTCAAATGCTGATTGG AGACCGATTACTTGATGGCATGAGCAATTGTTTACCGCTCCAGACTGCTCATTTCTTTGGAGTTTATGATGGTCATGGAGGCTCACAGGTGGCAAATTAT TGCCGTGATCGTTTCCATTCTGCTTTGTCTGAGGAGATAGAATTTGTTAAAAATGGCCTGATTGATGGAAGTATTAAGGATGGTTGCCAGGAGCAGTGGA AAAAAGCTTTCACCAGTTGTTTTCTTAAGGTAGATGCTGAAGTCGGAGGAAAGGGTAGTGCTGAACCAGTTGCTCCAGAAACTGTTGGTTCTACTGCTGT TGTGGCCACTATTTGTTCATCCCACATCATAGTAGCAAACTGTGGAGACTCACGAGCAGTTCTTTGTCGTGGGAAAGAACCAGTGGCATTATCAGTGGAT CATAAACCTAACCGAGAAGATGAGTATGCAAGGATAGAAGCCGCTGGAGGCAAGGTCATACAGTGGAATGGGCATCGTGTCTTTGGTGTTCTAGCTATGT CAAGATCTATTGGTGATAGATATTTAAAACCGTGGATTATTCCAGAACCTGAAGTGATGTTCATTCCTAGGGCAAAAGAAGATGAGTGCCTCATTCTGGC TAGTGATGGTTTGTGGGATGTCATGTCAAATGAAGAAGCATGTGATCTGGCTCGCAAACGAATACTTGTCTGGCACAAAAAGAATGGTGTCACACTTTCC TCCTCAAGGGGCGGGGGAATTGATCCTGCAGCTCAAGCAGCAGCTGAGTACCTCTCAAACCGTGCCCTTCAAAAAGGAAGCAAGGACAACATCACTGTAA TTGTGGTGGATCTGAAGGCGCAGAGGAAGTTCAAAACCAAAACATGA
AA sequence Show only first row Show all	>Potri.018G060300.3 pacid=42800796 polypeptide=Potri.018G060300.3.p locus=Potri.018G060300 ID=Potri.018G060300.3.v4.1 annot-version=v4.1 MEEMYRAVAVPFRVGNSVCESPSLDTHMDITRLLMADTASLLSDTVTKVSTVGNKDCNCCDLDDEVKDTAVQAPKEDKGGGGGPLLDMISENERNWVVGD DVITRDSEEDDSLSLEGDPILDCSCSLSVASETSSLCGEDFLSFEATFEVGTPSSVDIEKSAGGVDIIPKTADLGDLNVDAIVSDPLSVAGIVEEEVGDG SDAKTSAVVPKLTLERGASGTISRSVFEVDYIPLWGFTSVCGRRPEMEDAVAAVPYFLKIHIQMLIGDRLLDGMSNCLPLQTAHFFGVYDGHGGSQVANY CRDRFHSALSEEIEFVKNGLIDGSIKDGCQEQWKKAFTSCFLKVDAEVGGKGSAEPVAPETVGSTAVVATICSSHIIVANCGDSRAVLCRGKEPVALSVD HKPNREDEYARIEAAGGKVIQWNGHRVFGVLAMSRSIGDRYLKPWIIPEPEVMFIPRAKEDECLILASDGLWDVMSNEEACDLARKRILVWHKKNGVTLS SSRGGGIDPAAQAAAEYLSNRALQKGSKDNITVIVVDLKAQRKFKTKT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G72770		HAB1	HYPERSENSITIVE TO ABA1, homolo...		Potri.018G060300 [exp]	0	1
AT4G02680		EOL1	ETO1-like 1 (.1)		Potri.002G048300 [exp]	1.41	0.8011
AT5G01260			Carbohydrate-binding-like fold...		Potri.016G114500 [exp]	2.00	0.7226
AT1G65430		ATARI8, ARI8	ARABIDOPSIS ARIADNE 8, ARIADNE...		Potri.010G180600 [exp]	8.06	0.7188
AT4G04970		ATGSL01, ATGSL1	GLUCAN SYNTHASE LIKE-1, GLUCAN...		Potri.011G052400 [exp]	8.48	0.7738
AT5G12950			Putative glycosyl hydrolase of...		Potri.001G018200 [exp]	14.07	0.7662
AT5G03960		IQD12	IQ-domain 12 (.1)		Potri.006G046000 [exp]	15.09	0.6486
AT4G02570		AXR6, ATCUL1	AUXIN RESISTANT 6, cullin 1 (....		Potri.010G023800 [exp]	15.09	0.6765	Pt-CUL1.3
AT4G03020			transducin family protein / WD...		Potri.010G026800 [exp]	18.43	0.6911
AT1G15750		TPL, WSIP1	WUS-INTERACTING PROTEIN 1, TOP...		Potri.013G081300 [exp]	19.49	0.6746
AT2G37440			DNAse I-like superfamily prote...		Potri.017G074200 [exp]	20.78	0.6661

Compare expression of checked genes

Potri.018G060300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.