Plant FIBer expression Database

Potri.018G060500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G11960 461 / 9e-164 Protein of unknown function (DUF803) (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G226000
[exp]
566 / 0 AT5G11960 431 / 6e-152 Protein of unknown function (DUF803) (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10013530
[exp]
459 / 3e-163 AT5G11960 472 / 2e-168 Protein of unknown function (DUF803) (.1)
Lus10004444
[exp]
441 / 2e-156 AT5G11960 470 / 1e-167 Protein of unknown function (DUF803) (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0184 DMT PF05653 Mg_trans_NIPA Magnesium transporter NIPA
Representative CDS sequence
>Potri.018G060500.2 pacid=42800845 polypeptide=Potri.018G060500.2.p locus=Potri.018G060500 ID=Potri.018G060500.2.v4.1 annot-version=v4.1
ATGTGGGAATCGATCTGTTTAACGTTGGCAGCCACCGCCGGTAATAACATCGGCAAAGTTCTTCAAAAGAAGGGCACTCTCATTCTGCCTCCCCTCTCTT
TCAAACTAAAGGTGATAAGGGCATATGCTGCTAATAAAGCTTGGATCATTGGCTTTCTTATCGATATATGTGGTGCATTGTTGATGTTGAGAGCGTTATC
TCAAGCTCCTGTATCTGTCATCCAACCAGTTTCTGGTTGTGGACTTGCTATTCTTTCTGTCTTTTCCCATTTTTACCTAAAGGAAGTCATGAATGTCATT
GATTGGATAGGAATCACTTTGGCTGGTATTGGTACAATAGGAGTTGGTGCTGGAGGTGAAGAGCAAGAGGCATCTTCTGTATCTATTTTTCAATTACCTT
GGCTGGCGTTCCTTGTTGCCCTCTTGTTTGTAGTCCTCAACGGATGGCTTCGGGTATACAGACATCAAAGAAGAGCACATGAAATGATGGACTATGAAGT
TGTTGAAGAAATTATATATGGTTTGGAATCTGGCATTTTGTTTGGGATGGCTTCTGTAATATCAAAGATGGGATTTGTCTTCCTGGAGCAGGGTTTCTCC
AGGATGCTAGTCCCTATATGCGTCTCCATCAGTATATGCTGTAGTGCAACGGGATTTTATTACCAGACTCAGGGTCTAAAGCATGGAAGGGCAATTGTGG
TGTCTACATGTGCTGCCGTGGCATCAATAGTGACTGGTGTACTTGCTGGAATGCTTGCATTAGGAGAACAGTTGCCTTCAGCACCCACTGCTCGTTTTTC
ACTTCTACTTGGATGGCTGTTTATCGTAGTAGGTGTGATTTTACTTGTTAGTTCAACTTGGCTGCTGCGGCATCTTCCATTGCGTCGCTTCATACGAATT
AATGTTGATCGAAATTTCAGTCTAAGTCGATCAGGATCTCTCCGACTTAAGGATTCAAACCCAACTGCTGTTATCCATGCAGCAACATTGCATCATTTGA
TATCATCTCCGTCCAAGGAGAAGGCTTGA
AA sequence
>Potri.018G060500.2 pacid=42800845 polypeptide=Potri.018G060500.2.p locus=Potri.018G060500 ID=Potri.018G060500.2.v4.1 annot-version=v4.1
MWESICLTLAATAGNNIGKVLQKKGTLILPPLSFKLKVIRAYAANKAWIIGFLIDICGALLMLRALSQAPVSVIQPVSGCGLAILSVFSHFYLKEVMNVI
DWIGITLAGIGTIGVGAGGEEQEASSVSIFQLPWLAFLVALLFVVLNGWLRVYRHQRRAHEMMDYEVVEEIIYGLESGILFGMASVISKMGFVFLEQGFS
RMLVPICVSISICCSATGFYYQTQGLKHGRAIVVSTCAAVASIVTGVLAGMLALGEQLPSAPTARFSLLLGWLFIVVGVILLVSSTWLLRHLPLRRFIRI
NVDRNFSLSRSGSLRLKDSNPTAVIHAATLHHLISSPSKEKA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G11960 Protein of unknown function (D... Potri.018G060500
[exp]
0 1
AT2G27030 CAM5, CAM2, ACA... calmodulin 5 (.1.2.3) Potri.001G222200
[exp]
3.16 0.9526 Pt-ACCAL.3
AT1G48880 TBL7 TRICHOME BIREFRINGENCE-LIKE 7 ... Potri.005G060800
[exp]
3.46 0.9606
AT5G36290 Uncharacterized protein family... Potri.013G086700
[exp]
3.46 0.9604
AT1G64650 Major facilitator superfamily ... Potri.003G145600
[exp]
3.87 0.9598
AT1G75420 UDP-Glycosyltransferase superf... Potri.002G031300
[exp]
4.24 0.9553
AT4G29130 GIN2, ATHXK1 GLUCOSE INSENSITIVE 2, ARABIDO... Potri.001G190400
[exp]
6.00 0.9490
AT1G60780 HAP13 HAPLESS 13, Clathrin adaptor c... Potri.010G044700
[exp]
6.63 0.9580
AT4G02080 ASAR1, ATSARA1C... secretion-associated RAS super... Potri.010G141900
[exp]
6.70 0.9527 Pt-SAR1.2
AT1G61667 Protein of unknown function, D... Potri.004G029600
[exp]
9.05 0.9338
AT3G01640 ATGLCAK ARABIDOPSIS THALIANA GLUCURONO... Potri.001G343400
[exp]
9.94 0.9375

Potri.018G060500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.