Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G12000 714 / 0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT5G26150 680 / 0 protein kinase family protein (.1) AT2G24370 619 / 0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT4G31230 600 / 0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT1G78940 597 / 0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1.2) AT1G16760 593 / 0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT3G20200 566 / 0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT5G35380 564 / 0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT2G07020 463 / 2e-153 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT1G17540 435 / 2e-142 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G225300 [exp] 1076 / 0 AT5G12000 749 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.006G078500 [exp] 605 / 0 AT2G24370 824 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.018G002400 [exp] 529 / 3e-178 AT2G24370 956 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.007G001900 [exp] 502 / 3e-167 AT1G78940 757 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1.2) Potri.001G198300 [exp] 501 / 2e-166 AT5G12000 639 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.014G001700 [exp] 451 / 3e-147 AT1G78940 783 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1.2) Potri.004G170742 [exp] 421 / 3e-136 AT1G78940 786 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1.2) Potri.006G147000 [exp] 336 / 2e-104 AT5G57035 674 / 0.0 U-box domain-containing protein kinase family protein (.1) Potri.004G233000 [exp] 330 / 4e-101 AT4G25160 874 / 0.0 U-box domain-containing protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021596 [exp] 634 / 0 AT2G24370 828 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10040573 [exp] 619 / 0 AT2G24370 815 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10024212 [exp] 603 / 0 AT2G24370 780 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10026439 [exp] 535 / 0 AT5G12000 662 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10020185 [exp] 533 / 0 AT2G24370 741 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10027593 [exp] 510 / 3e-174 AT2G24370 665 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10026989 [exp] 517 / 6e-173 AT2G24370 1014 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10035712 [exp] 503 / 4e-171 AT1G16760 624 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10008542 [exp] 508 / 6e-170 AT2G24370 823 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10037298 [exp] 500 / 2e-166 AT1G16760 820 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0039 [poplar] [flax] HUP PF00582 [poplar] [flax] Usp Universal stress protein family
Representative CDS sequence Show only first row Show all	>Potri.018G061600.1 pacid=42801933 polypeptide=Potri.018G061600.1.p locus=Potri.018G061600 ID=Potri.018G061600.1.v4.1 annot-version=v4.1 ATGGCTTCCAATGCCACTGCTGATTCCCTCTTCAACGCCACTTCTGTAGCCATCGACAAAGATAAGAACAGCCAGCATGCTGTTCGCTGGGCTGTCGATA ATCTCGCAAGCAATAACTCGGTTCTTGTCCTAATTCATGTCAAGCACAAAAACCATCAATATCAAGTTGCTAATGGTCAGGATGGTGATGGTGATGATGA GGCGCATCAGCTTTTCACTCCCTACCGTGGATATTGCGCCCGTAAAGGGGTTCGTTTGAAGGAGGTTGTGCTTGATGACATTGATGTTGCTCGGGCAGTT GCGGACTACATCAACATCAATTTAATTGGAAATATTGTGTTTGGTGCATCAGGAAGAAATGTTCTTACAAGGAAATTCAAAAACCAAGATGTGCCAACTA GCTTTATGAAAATTGCCCCAGATTTTTGTTCTGTTTATGTAATCACCAAGGGAAAGATCCTCTCCACCCAAAAAGCACAACGGACGCCTACTTATAATGT CCCACAGAAGACAGCATCCATGCCAGTAATTCCATCTCAAAGTCTACACGATAATGCTGAACTAGATTTGGATGGAGTTAGGGTACAGTCCGAGAAAGGA GGGTGGAGAAGTGCCGAAGCAGGTGGATTTCCTTTGGACAAGGTCAATGATTCCATGAGAGGATCACAACCTGAGAGAGGCAGAAATTCCATCTCTAATT TCTCTATGGACAGCACTTACCTTCCCTCGTCCTGCGGAAGACCATCAACTTCCCGTGTTTCTACATCTGATGGATCTGAATTTTCAGGATTATTCGCAAC ATCAATCATGGACAGCTCAGCCCAAAGTTCAGATTTCTCTGTTGCTTCAGCCTCTAATCTGAATGAGTCAAATGCGGACCATTTAGAAGTTGAGATGAGA AGGCTGAGGCTTGAGTTGAAGCAGACCATGGAAATGTATAGCACAGCTTGCAAAGAAGCACTCTCAGCCAAACAGAAGGCTAGTGAACTTAATCAATGGA AGATTGACGAGGTTCGTAAATTTGAGGAAGCCAAGCTCGCAGGAGAGGCAGCCCTTGCCGTGGCAGAGTTGGAGAAGGCTAAGTGCAAAGTTGCCATTGA AGCAGCTGAGAAATCACAGAAACTAGCAGAGTTGGAAGGACAGAAAAGAAAACATGCAGAGAAGAAAGCTGAGCGAGAGACAGAGGAGAAGAATCGTGCT TTAAATGCTTTGGCACATAATGATGTGCGGTACAGAAGATACACAATCGAAGAGATTGAAGAAGCCACGGATAAATTCTCACCATCAAATAAAATTGGTG AAGGAGGATATGGACCTGTGTATAAAGGCAAACTTGATCATACCCCAGTTGCAATCAAGGCTTTAAGACCGGATGCTGCTCAAGGAAAGAAGCAGTTCCA ACAGGAGGTTGAGGTTCTCAGCTGCATTAGACACCCACACATGGTCCTTCTTCTTGGTGCCTGCCCTGAGTATGGAATCTTGGTATATGAATACATGGAC AACGGAAGCTTGGAAGACAGGCTACTTCAAAAACACAACACCCCTCCAATTCCATGGGGCATACGATTCAAAATAGCTGCTGAGATTGCGACCGCACTTC TGTTCCTCCACCAAGCAAAGCCAGAGCCCCTCGTCCATCGGGACCTTAAACCAGCAAACATTCTTTTGGACAGCAACTATGTGTGCAAAATTAGTGATGT TGGCCTCGCTCGGTTAGTCCCTCTTTCTGTAGCTGATAGTGTCACACAATACCACATGACCTCTGCTGCAGGAACGTTTTGTTATATAGATCCCGAGTAT CAACAAACAGGAATGTTAACTACAAGATCAGACATATACTCGTTGGGAATAATGTTTCTCCAAATCATCACAGCCAAGCCTCCGATGGGTCTTGCTCATC AGGTGGGGAGGGCCATTGAAAGAGGAAAATTTGCAGACATGCTTGACCAAACAGTACCAGACTGGCCTGTGGAAGAGGCGTTAAGATTTGCTGCACTGGC ATTGAAGTGTGCTGAATTAAGGAAGAAAGACAGGCCAAGTCTTGCCACGGTTATAGTGCCAGAGCTTAACCGGTTGAGAGACCTAGGAATGAACACGGAG CAGCAAAGAAGCAAAGATAATCACCAGAGCCGAGAAGTCAACAGCAGAGGTCGTAGTCGCAGTCCCCTTTCACATCCTCTATCAACTTCACAGGGAAGGA TGCCAAATGCTACTCAGGAGAACGCATATAGGTCTTATGGAAAGAGAACTAAGCATGACTCTAATCAAGAAAGCGGATGA
AA sequence Show only first row Show all	>Potri.018G061600.1 pacid=42801933 polypeptide=Potri.018G061600.1.p locus=Potri.018G061600 ID=Potri.018G061600.1.v4.1 annot-version=v4.1 MASNATADSLFNATSVAIDKDKNSQHAVRWAVDNLASNNSVLVLIHVKHKNHQYQVANGQDGDGDDEAHQLFTPYRGYCARKGVRLKEVVLDDIDVARAV ADYININLIGNIVFGASGRNVLTRKFKNQDVPTSFMKIAPDFCSVYVITKGKILSTQKAQRTPTYNVPQKTASMPVIPSQSLHDNAELDLDGVRVQSEKG GWRSAEAGGFPLDKVNDSMRGSQPERGRNSISNFSMDSTYLPSSCGRPSTSRVSTSDGSEFSGLFATSIMDSSAQSSDFSVASASNLNESNADHLEVEMR RLRLELKQTMEMYSTACKEALSAKQKASELNQWKIDEVRKFEEAKLAGEAALAVAELEKAKCKVAIEAAEKSQKLAELEGQKRKHAEKKAERETEEKNRA LNALAHNDVRYRRYTIEEIEEATDKFSPSNKIGEGGYGPVYKGKLDHTPVAIKALRPDAAQGKKQFQQEVEVLSCIRHPHMVLLLGACPEYGILVYEYMD NGSLEDRLLQKHNTPPIPWGIRFKIAAEIATALLFLHQAKPEPLVHRDLKPANILLDSNYVCKISDVGLARLVPLSVADSVTQYHMTSAAGTFCYIDPEY QQTGMLTTRSDIYSLGIMFLQIITAKPPMGLAHQVGRAIERGKFADMLDQTVPDWPVEEALRFAALALKCAELRKKDRPSLATVIVPELNRLRDLGMNTE QQRSKDNHQSREVNSRGRSRSPLSHPLSTSQGRMPNATQENAYRSYGKRTKHDSNQESG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G12000			Protein kinase protein with ad...		Potri.018G061600 [exp]	0	1
					Potri.003G014176 [exp]	9.79	0.5470
AT3G30390			Transmembrane amino acid trans...		Potri.010G136601 [exp]	18.89	0.5266
AT2G31180	MYB	ATMYB14, Myb14a...	ARABIDOPSIS THALIANA MYB DOMAI...		Potri.010G071100 [exp]	20.14	0.5123	MYB172
					Potri.010G007833 [exp]	24.00	0.5729
AT5G26594		ARR24	response regulator 24 (.1)		Potri.019G024900 [exp]	25.76	0.5667
AT3G19280		FUCTA, FUCT1, A...	fucosyltransferase 11 (.1)		Potri.019G091200 [exp]	27.33	0.5667	FUCT3.1
					Potri.019G002628 [exp]	28.63	0.5890
AT5G28780			PIF1 helicase (.1)		Potri.011G042150 [exp]	31.55	0.5667
AT5G42240		SCPL42	serine carboxypeptidase-like 4...		Potri.005G187700 [exp]	44.23	0.5358
AT2G35615			Eukaryotic aspartyl protease f...		Potri.003G105300 [exp]	55.24	0.5194

Compare expression of checked genes

Potri.018G061600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.