Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33060 548 / 0 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT5G67530 122 / 1e-29 ATPUB49 plant U-box 49 (.1) AT2G36130 114 / 1e-29 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT3G44600 121 / 5e-29 AtCYP71, CYP71 cyclophilin 71, cyclophilin71 (.1) AT1G01940 108 / 2e-27 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT2G38730 86 / 3e-19 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT4G34960 83 / 6e-18 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT3G56070 82 / 6e-18 ROC2 rotamase cyclophilin 2 (.1.2) AT4G34870 79 / 6e-17 ATCYP1, ROC5 ARABIDOPSIS THALIANA CYCLOPHILIN 1, rotamase cyclophilin 5 (.1) AT5G58710 79 / 9e-17 ROC7 rotamase CYP 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G225167 [exp] 199 / 2e-61 AT4G33060 98 / 6e-24 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.006G225201 [exp] 144 / 2e-41 AT4G33060 125 / 1e-35 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.005G148900 [exp] 125 / 2e-30 AT5G67530 806 / 0.0 plant U-box 49 (.1) Potri.009G146400 [exp] 124 / 3e-30 AT3G44600 1095 / 0.0 cyclophilin 71, cyclophilin71 (.1) Potri.016G075600 [exp] 114 / 1e-29 AT2G36130 278 / 3e-97 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.002G149700 [exp] 107 / 4e-27 AT1G01940 293 / 3e-103 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.014G071600 [exp] 104 / 5e-26 AT1G01940 293 / 2e-103 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.003G194500 [exp] 88 / 6e-20 AT2G38730 349 / 2e-124 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.001G030000 [exp] 86 / 3e-19 AT2G38730 348 / 5e-124 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026441 [exp] 502 / 2e-175 AT4G33060 555 / 0.0 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10024999 [exp] 318 / 2e-101 AT4G33060 344 / 9e-112 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10007794 [exp] 126 / 8e-31 AT5G67530 868 / 0.0 plant U-box 49 (.1) Lus10004731 [exp] 125 / 1e-30 AT5G67530 916 / 0.0 plant U-box 49 (.1) Lus10006271 [exp] 123 / 9e-30 AT3G44600 1110 / 0.0 cyclophilin 71, cyclophilin71 (.1) Lus10020573 [exp] 123 / 9e-30 AT3G44600 1115 / 0.0 cyclophilin 71, cyclophilin71 (.1) Lus10017010 [exp] 108 / 3e-27 AT2G36130 278 / 4e-97 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10021335 [exp] 107 / 4e-27 AT2G36130 286 / 1e-100 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10009237 [exp] 105 / 4e-26 AT1G01940 317 / 2e-112 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10026161 [exp] 86 / 5e-19 AT2G38730 346 / 5e-123 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0475 [poplar] [flax] Cyclophil-like PF00160 [poplar] [flax] Pro_isomerase Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Representative CDS sequence Show only first row Show all	>Potri.018G061700.1 pacid=42802061 polypeptide=Potri.018G061702.1.p locus=Potri.018G061700 ID=Potri.018G061700.1.v4.1 annot-version=v4.1 ATGTCATCGATTTACGTGTCAGAGCCACCAACGAAAGGCAAAGTAATACTAAACACAACGTACGGACCTTTAGACATCGAGCTCTGGCCTAAAGAAGCAC CGAAAGCTGTTAGAAACTTCGTCCAACTCTGCCTCGAAGGTTACTATGATAAAACCATCTTTCACCGTATTATTAAGGGCTTTCTTGTTCAAGGCGGCGA CCCTACTGGCACTGGCACAGGTGGTGAAAGTATATATGGAAGTGTGTTCGCCGATGAGTATCATTCGCGTCTGAGGTTTAACCATAGAGGGCTAGTTGCA TGCGCAAATGCAGGTAGGCCGCATTCAAATGGGAGTCAGTTTTTTATCTCGTTGGAAAAGTGTGATTGGCTTGATAAGAAGAATACTATTTTTGGAAAGG TTACTGGGGACTCGGTATATAATCTTCTGTCACTTGGTGAGGTTGAAACTAATAAGGACAATGATTGGCCATTAGATCCACCTCCAAGAATAATATCAGT TGAGGTACTGTGGAACCCTTTTGAAGATATCATTCCAAGGGTAACTCCCAAGCCCTCAAACAAACCTGCAATTGATACTGAAAATAAAGATTCAAAGAAG AAAGCTGTGAAAAAGCTGAACTTGCTTTCGTTTGGAGAAGAAGCTGAAGAAGAGGAGAAGGAATTGGCAGCTGTGAAGCAAAAGATCAAGAGCAGTCATG ATGTATTGAATGATCCTCGTCTCCTAAAAGAAGAAAATCCGAGTAAAGAAACGAACTCTTCTGAAGGTAAAACAACTAGGGATATTCAGTTATCTGTTAA AGAAGCTCTAAGCTCAAAGAAAGGCACTTTATCTGTTAAAGAAGGTCCAAGCTCGAAGAAAGAAGCATCATGGAGAGATTCAGCAGCTGAATTTTCCAAC AGTGATGATAATGAAGAAGATGAGGGCATGTTTGATGCACGAATGCGCCAGCAAATACTTCAAAAAAGAAAGGAGCTTGGGGATGTTCCACCAAAGCCAA AGCAAAATGGGAGCTCTAGCTCAAAGGATCGTCAAGTCTCTGCAAGATCCAACAGTGAAAGCTTCAATGATGACCAACCAAAGGTGGAAAAATTGTCAAT GAAGAAAAAGGGAGTAGGATCAGAGGCCAGGGCTGCTCGTATGGCTAATGCAGATGCAGACTTACAGTTGTTGGGTGAAACTGAACGAGGAAGACTATTG CAGAAACAAAAGAAGCGCCGACTTCAAGGGCGCGAGGATGATGTTTTAGCAAAACTTGAAATGTTTAAAAAGGCCCTCTCTACAAAGGCTGATGCCTCAA AGAGCGAATCTGGAGATGCTGATAATGAAGATTTGTCTGACTGGAGAACTGTCCCCCTAACATTTGCACATGAACGTGGCAAGGATGGTATGTCTCGCAA AGAGGATCCAAATGACTATGTTGTGCATGACCCTCTTTTGGAGAAAGGGAAAGAGAAATTTAACCGGATGCAAGCCAAGCAAAAGAGACGAGAACGAGAA TGGGCTGGAAAATCCCTTGCTTAG
AA sequence Show only first row Show all	>Potri.018G061700.1 pacid=42802061 polypeptide=Potri.018G061702.1.p locus=Potri.018G061700 ID=Potri.018G061700.1.v4.1 annot-version=v4.1 MSSIYVSEPPTKGKVILNTTYGPLDIELWPKEAPKAVRNFVQLCLEGYYDKTIFHRIIKGFLVQGGDPTGTGTGGESIYGSVFADEYHSRLRFNHRGLVA CANAGRPHSNGSQFFISLEKCDWLDKKNTIFGKVTGDSVYNLLSLGEVETNKDNDWPLDPPPRIISVEVLWNPFEDIIPRVTPKPSNKPAIDTENKDSKK KAVKKLNLLSFGEEAEEEEKELAAVKQKIKSSHDVLNDPRLLKEENPSKETNSSEGKTTRDIQLSVKEALSSKKGTLSVKEGPSSKKEASWRDSAAEFSN SDDNEEDEGMFDARMRQQILQKRKELGDVPPKPKQNGSSSSKDRQVSARSNSESFNDDQPKVEKLSMKKKGVGSEARAARMANADADLQLLGETERGRLL QKQKKRRLQGREDDVLAKLEMFKKALSTKADASKSESGDADNEDLSDWRTVPLTFAHERGKDGMSRKEDPNDYVVHDPLLEKGKEKFNRMQAKQKRRERE WAGKSLA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G33060			Cyclophilin-like peptidyl-prol...		Potri.018G061700 [exp]	0	1
AT1G02840		ATSRP34, SR1, S...	Serine/Arginine-Rich Protein S...		Potri.002G205025 [exp]	3.00	0.7611
AT4G37210			Tetratricopeptide repeat (TPR)...		Potri.007G034200 [exp]	5.47	0.7445
AT5G43822			Pentatricopeptide repeat (PPR)...		Potri.005G253200 [exp]	9.79	0.7394
AT3G19640		MRS2-3, MGT4	magnesium transporter 4 (.1)		Potri.001G291932 [exp]	47.66	0.7481
AT5G19460		ATNUDT20	nudix hydrolase homolog 20 (.1...		Potri.006G157800 [exp]	68.46	0.6740
AT4G02070		ATMSH6, MSH6-1	MUTS HOMOLOG 6-1, ARABIDOPSIS...		Potri.008G191051 [exp]	70.03	0.6988
AT5G37630		EMB2656	EMBRYO DEFECTIVE 2656, ARM rep...		Potri.004G085500 [exp]	70.14	0.6837
AT1G60890			Phosphatidylinositol-4-phospha...		Potri.001G211200 [exp]	83.06	0.6734
AT5G09920		NRPB4, ATRPB15....	RNA polymerase II, Rpb4, core ...		Potri.007G080400 [exp]	137.22	0.6992

Compare expression of checked genes

Potri.018G061700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.