Plant FIBer expression Database

Potri.018G061800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G32960 315 / 1e-108 unknown protein
AT4G32970 264 / 3e-84 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10007456
[exp]
365 / 7e-129 AT4G32960 364 / 2e-128 unknown protein
PFAM info
Representative CDS sequence
>Potri.018G061800.1 pacid=42802004 polypeptide=Potri.018G061800.1.p locus=Potri.018G061800 ID=Potri.018G061800.1.v4.1 annot-version=v4.1
ATGGAGATGGTAGAAGCAGACAGCTCTACAGCAAAATTATACAGTCTGAATCCAAATCGAATAAGCAACGAAGACATTTTGTTTTGCATAGACATCGGCC
CAGAATCTCTTGTGGAAATGAAATCCACAGGACCCGGTGGTAAACCCCTCACTAGACTGGACTCAATCAAGCAAGCTATTCTTGTCTTTATCAACGCCAA
GCTCTCTATCAACCCTGATCACCGCTTCGCTTTTGCCACTCTCGCCAAAACCGCTTCTTGGCTGCGGAAAGAGTTCAGCAGTGATGTCGAGTCTGCAGCT
GCTGCTCTCAGGGGGCTCTCGGCGGCTTCAGCTTCATCTTCTGGTCCACCAGACCTTACTCAATTATTTCGTGTAGCAGCTCATGAAGCAAAGAAATCCT
ATGCACAAAATCGGATATTGAGAGTGATTCTGATATACTGCAGATCATGTGTACAACCTCAACATCAATGGCCTGTTAGCCAGAAACTCTTCACATTGGA
TGTGATGTACCTCCATGACAAGCCTGGACCTGACAACTGCCCCCAGGAGGTTTATGATGCACTTGTTGATACTCTCGAACATGTTTCCCAGTATGAGGGT
TACATTCATGAGACTGGGCAGGGGGTGCGAATCCTCCTCCGTTACATGTCAGTGCTATTGTCACACCCTCAGCAGCGTTGCACACAAGACATGATGGACT
TGCCCAAGTCTCTTACAAAGAGATCACCTACATGTGATCCAGCTAATGGTGAAGAAGGTGCTCCTATATCCAGCCAGTGA
AA sequence
>Potri.018G061800.1 pacid=42802004 polypeptide=Potri.018G061800.1.p locus=Potri.018G061800 ID=Potri.018G061800.1.v4.1 annot-version=v4.1
MEMVEADSSTAKLYSLNPNRISNEDILFCIDIGPESLVEMKSTGPGGKPLTRLDSIKQAILVFINAKLSINPDHRFAFATLAKTASWLRKEFSSDVESAA
AALRGLSAASASSSGPPDLTQLFRVAAHEAKKSYAQNRILRVILIYCRSCVQPQHQWPVSQKLFTLDVMYLHDKPGPDNCPQEVYDALVDTLEHVSQYEG
YIHETGQGVRILLRYMSVLLSHPQQRCTQDMMDLPKSLTKRSPTCDPANGEEGAPISSQ

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G32960 unknown protein Potri.018G061800
[exp]
0 1
AT1G80860 ATPLMT ARABIDOPSIS PHOSPHOLIPID N-MET... Potri.001G044200
[exp]
4.24 0.6664
AT3G23255 unknown protein Potri.003G163500
[exp]
9.69 0.6827
AT5G57330 Galactose mutarotase-like supe... Potri.018G089800
[exp]
11.26 0.5355
AT4G21780 unknown protein Potri.004G018600
[exp]
13.45 0.6942
AT1G10865 unknown protein Potri.008G010300
[exp]
18.16 0.6142
AT3G60830 ATARP7 actin-related protein 7 (.1) Potri.009G060200
[exp]
23.91 0.5966 ARP902,Pt-ARP7.2
AT1G04420 NAD(P)-linked oxidoreductase s... Potri.015G042100
[exp]
25.76 0.6401
AT4G36720 HVA22K HVA22-like protein K (.1) Potri.007G029300
[exp]
34.20 0.5596
AT2G17270 PHT3;3 phosphate transporter 3;3 (.1) Potri.005G098800
[exp]
34.98 0.5713
AT5G42320 Zn-dependent exopeptidases sup... Potri.002G010800
[exp]
39.38 0.5740

Potri.018G061800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.