Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33050 601 / 0 EDA39 embryo sac development arrest 39, calmodulin-binding family protein (.1.2.3.4) AT2G26190 578 / 0 calmodulin-binding family protein (.1) AT5G57010 495 / 6e-172 calmodulin-binding family protein (.1) AT3G13600 413 / 4e-138 calmodulin-binding family protein (.1) AT3G58480 400 / 1e-133 calmodulin-binding family protein (.1) AT3G52870 364 / 6e-121 IQ calmodulin-binding motif family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G226400 [exp] 883 / 0 AT4G33050 598 / 0.0 embryo sac development arrest 39, calmodulin-binding family protein (.1.2.3.4) Potri.006G226500 [exp] 560 / 0 AT4G33050 433 / 9e-151 embryo sac development arrest 39, calmodulin-binding family protein (.1.2.3.4) Potri.006G147900 [exp] 548 / 0 AT2G26190 513 / 2e-178 calmodulin-binding family protein (.1) Potri.001G006200 [exp] 449 / 2e-152 AT3G13600 697 / 0.0 calmodulin-binding family protein (.1) Potri.003G218800 [exp] 447 / 9e-151 AT3G13600 734 / 0.0 calmodulin-binding family protein (.1) Potri.006G197500 [exp] 422 / 4e-141 AT3G58480 588 / 0.0 calmodulin-binding family protein (.1) Potri.016G063000 [exp] 404 / 1e-134 AT3G58480 587 / 0.0 calmodulin-binding family protein (.1) Potri.001G005600 [exp] 387 / 4e-131 AT3G13600 431 / 4e-148 calmodulin-binding family protein (.1) Potri.006G114700 [exp] 382 / 1e-127 AT3G52870 561 / 0.0 IQ calmodulin-binding motif family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013526 [exp] 583 / 0 AT5G57010 581 / 0.0 calmodulin-binding family protein (.1) Lus10014872 [exp] 572 / 0 AT4G33050 577 / 0.0 embryo sac development arrest 39, calmodulin-binding family protein (.1.2.3.4) Lus10025173 [exp] 490 / 5e-169 AT3G13600 575 / 0.0 calmodulin-binding family protein (.1) Lus10016052 [exp] 488 / 3e-168 AT3G13600 582 / 0.0 calmodulin-binding family protein (.1) Lus10039178 [exp] 438 / 1e-147 AT3G13600 697 / 0.0 calmodulin-binding family protein (.1) Lus10013759 [exp] 433 / 1e-145 AT3G58480 690 / 0.0 calmodulin-binding family protein (.1) Lus10003257 [exp] 397 / 4e-134 AT3G52870 576 / 0.0 IQ calmodulin-binding motif family protein (.1) Lus10035595 [exp] 394 / 4e-132 AT3G52870 575 / 0.0 IQ calmodulin-binding motif family protein (.1) Lus10029324 [exp] 387 / 1e-129 AT3G58480 472 / 6e-163 calmodulin-binding family protein (.1) Lus10016219 [exp] 389 / 5e-129 AT3G58480 569 / 0.0 calmodulin-binding family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.018G061901.1 pacid=42800819 polypeptide=Potri.018G061901.1.p locus=Potri.018G061901 ID=Potri.018G061901.1.v4.1 annot-version=v4.1 ATGGGCCTTTCTTTTTCATTACTCTTGTCTGCATGGACTGCGATTCTGGGACACAAGTTTTTCGGCTCAAAGGATACTGTCGAAAAGATTGTTGTAAGGT CCCTCAGCTTTGCAAGGAAAGATGGAGAAATGGGTTCAAGGACAAACAGCTTCAAGAAAGATGTTTCAGAAACCATTGGAAAGTGTGAAGGGTCAGATAA ATTGAGTTTTGAGAGATCATTAAGCTTTAACCACTGGGATTCCGATAAAATCAAGGCTAAACCATCCGATTCATCCAGAAGTTCAAACTCTCTAAAGATA AAAGGTCATGAAACAGTCCACATAACAAAGCCTACAATATTACTCCCTGAACCACCTGTGATCTTCTTTTCTCCAAGACCTATTAGTGAGCTTGATGCTG CTGCAACTAAACTTCAAAAAGTCTACAAGAGTTACAGGACTAGGAGGAACCTTGCAGATTGTGCAGTTGTTGTTGAGGAACTTTGGTGGAAGGCCTTGGA TTTTGCAGCTTTGAAAAGGAGCTCGGTATCATTCTTCAACATTGAGAAACATGAAACTGCTATATCTAAGTGGGCCAGGGCCAGCACAAGGGTTGCTAAG CTTGGAAAGGGTTTATCCAAGGATGAGAAGGCTCAAAAGTTGGCCCTGCAACACTGGCTTGAAGCTATCGATCCACGCCATCGTTATGGACACAATTTAC ACTTCTATTACGATGTTTGGTTTGACAGCAGGAGCACACAACCTTTCTTTTACTGGTTGGACATTGGTGATGGTAAAGAAGTAAACCTTGAGAAGTGTCC AAGGAGCAAGCTTCAACGCCAATGCATTCAATACCTTGGACCAAAAGAAAGGGAAGCATTTGAGGTGATTGTAGAAAGTGGCAAGCTCGTGTACCGCCAA ACCGGATTGCTTGTTAACACCACGGATGATACGAAGTGGATTTTTGTGTTAAGCACTTCAAGATCCTTGTATGTAGGGCAGAAGAAGAAAGGTGTTTTCC AGCACTCAAGTTTCCTAGCTGGAGGAGCTACAACAGCTGCTGGAAGATTAGTATCAGAAGATGGGGTTCTACGGGCAATATGGCCTTACAGTGGTCATTA TCTCCCTACTGAGGACAATTTCAAAGAATTCATTAGTTTTCTTGAGGAGCATAATGTAGACTTAACAAATGTTAAGAGATGTTCAATAGATGATGATGAT TCTTCGTTCAAAGTTACCGATGAAGGGTGTAAACAAGAGGAGATGAAGGAAATCACCACGATCACATCTACCAACACAACAGCTAATGAGGTTGATGGGC CTATTGATAATAATAATAAAAAGACAACCAATGATCAACAGGACAATATGGAAGCTAATGCAGCCATGTTGCAAGCTCCAGCATTTGACCTAAGCAAGCG TTTATCATGCAAGTGGGCAAGTGGATACGGTCCCCGTATTGGATGTGTGAGGGACTATCCAGCTGATTTACAATCTCGGGCACTAGAGCAAGTCAACTTA TCGCCAAGGATCAATCCTGGCCTTGCAGGGAGTTGTGTTCCGATCCCTTCGCCGCGGCCGAGCCCAAAGGTTCGAGTCTCACCAAGGCTTGCATACATGG GACTTCCTAGTCCAAGGGTTGCGGTTTCTACTCGTCAAAGAGTTTGA
AA sequence Show only first row Show all	>Potri.018G061901.1 pacid=42800819 polypeptide=Potri.018G061901.1.p locus=Potri.018G061901 ID=Potri.018G061901.1.v4.1 annot-version=v4.1 MGLSFSLLLSAWTAILGHKFFGSKDTVEKIVVRSLSFARKDGEMGSRTNSFKKDVSETIGKCEGSDKLSFERSLSFNHWDSDKIKAKPSDSSRSSNSLKI KGHETVHITKPTILLPEPPVIFFSPRPISELDAAATKLQKVYKSYRTRRNLADCAVVVEELWWKALDFAALKRSSVSFFNIEKHETAISKWARASTRVAK LGKGLSKDEKAQKLALQHWLEAIDPRHRYGHNLHFYYDVWFDSRSTQPFFYWLDIGDGKEVNLEKCPRSKLQRQCIQYLGPKEREAFEVIVESGKLVYRQ TGLLVNTTDDTKWIFVLSTSRSLYVGQKKKGVFQHSSFLAGGATTAAGRLVSEDGVLRAIWPYSGHYLPTEDNFKEFISFLEEHNVDLTNVKRCSIDDDD SSFKVTDEGCKQEEMKEITTITSTNTTANEVDGPIDNNNKKTTNDQQDNMEANAAMLQAPAFDLSKRLSCKWASGYGPRIGCVRDYPADLQSRALEQVNL SPRINPGLAGSCVPIPSPRPSPKVRVSPRLAYMGLPSPRVAVSTRQRV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G33050		EDA39	embryo sac development arrest ...		Potri.018G061901 [exp]	0	1
AT3G22930		CML11	calmodulin-like 11 (.1)		Potri.005G215700 [exp]	2.44	0.9809
AT4G23220		CRK14	cysteine-rich RLK (RECEPTOR-li...		Potri.011G029800 [exp]	4.24	0.9530
AT5G60900		RLK1	receptor-like protein kinase 1...		Potri.003G211366 [exp]	4.89	0.9670
AT2G43000	NAC	ANAC042, JUB1, ...	NAC domain containing protein ...		Potri.001G080900 [exp]	5.29	0.9693
AT4G39670			Glycolipid transfer protein (G...		Potri.008G119600 [exp]	5.29	0.9512
AT3G07600			Heavy metal transport/detoxifi...		Potri.014G171300 [exp]	8.83	0.9432
AT1G73805		SARD1	SAR Deficient 1, Calmodulin bi...		Potri.015G045300 [exp]	8.83	0.9700
AT1G62300	WRKY	ATWRKY6, WRKY6	WRKY family transcription fact...		Potri.011G007800 [exp]	10.90	0.9625	Pt-WRKY42.1
AT3G56710		SIB1	sigma factor binding protein 1...		Potri.003G194700 [exp]	13.49	0.9513
AT5G40010		ASD, AATP1	ATPase-in-Seed-Development, AA...		Potri.004G091500 [exp]	16.30	0.9480

Compare expression of checked genes

Potri.018G061901 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.