Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G56450 182 / 1e-57 PM-ANT Mitochondrial substrate carrier family protein (.1) AT5G17400 66 / 2e-13 ER-ANT1 endoplasmic reticulum-adenine nucleotide transporter 1 (.1) AT5G13490 58 / 2e-10 AAC2 ADP/ATP carrier 2 (.1.2) AT3G08580 57 / 2e-10 AAC1 ADP/ATP carrier 1 (.1.2) AT4G28390 57 / 4e-10 ATAAC3, AAC3 ADP/ATP carrier 3 (.1) AT4G01100 45 / 3e-06 ADNT1 adenine nucleotide transporter 1 (.1.2) AT1G74240 42 / 7e-05 Mitochondrial substrate carrier family protein (.1) AT4G26180 41 / 0.0001 Mitochondrial substrate carrier family protein (.1) AT4G11440 39 / 0.0006 Mitochondrial substrate carrier family protein (.1) AT5G07320 39 / 0.0007 APC3 ATP/phosphate carrier 3, Mitochondrial substrate carrier family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G227100 [exp] 223 / 8e-74 AT5G56450 462 / 4e-165 Mitochondrial substrate carrier family protein (.1) Potri.001G019400 [exp] 62 / 4e-12 AT5G13490 580 / 0.0 ADP/ATP carrier 2 (.1.2) Potri.009G062200 [exp] 59 / 7e-11 AT5G13490 625 / 0.0 ADP/ATP carrier 2 (.1.2) Potri.017G012800 [exp] 58 / 1e-10 AT4G28390 575 / 0.0 ADP/ATP carrier 3 (.1) Potri.007G139100 [exp] 58 / 1e-10 AT4G28390 572 / 0.0 ADP/ATP carrier 3 (.1) Potri.003G204600 [exp] 58 / 2e-10 AT5G13490 582 / 0.0 ADP/ATP carrier 2 (.1.2) Potri.012G062500 [exp] 57 / 3e-10 AT5G17400 416 / 5e-147 endoplasmic reticulum-adenine nucleotide transporter 1 (.1) Potri.001G267800 [exp] 57 / 4e-10 AT3G08580 592 / 0.0 ADP/ATP carrier 1 (.1.2) Potri.001G094100 [exp] 48 / 5e-07 AT4G01100 563 / 0.0 adenine nucleotide transporter 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013518 [exp] 188 / 5e-60 AT5G56450 485 / 8e-174 Mitochondrial substrate carrier family protein (.1) Lus10039847 [exp] 64 / 2e-12 AT4G28390 545 / 0.0 ADP/ATP carrier 3 (.1) Lus10018612 [exp] 59 / 2e-11 AT5G13490 301 / 1e-102 ADP/ATP carrier 2 (.1.2) Lus10031843 [exp] 61 / 3e-11 AT5G13490 580 / 0.0 ADP/ATP carrier 2 (.1.2) Lus10016417 [exp] 60 / 3e-11 AT5G13490 602 / 0.0 ADP/ATP carrier 2 (.1.2) Lus10017874 [exp] 60 / 3e-11 AT5G17400 473 / 5e-170 endoplasmic reticulum-adenine nucleotide transporter 1 (.1) Lus10034658 [exp] 60 / 3e-11 AT5G17400 491 / 5e-177 endoplasmic reticulum-adenine nucleotide transporter 1 (.1) Lus10019701 [exp] 60 / 4e-11 AT5G13490 607 / 0.0 ADP/ATP carrier 2 (.1.2) Lus10019702 [exp] 60 / 4e-11 AT5G13490 612 / 0.0 ADP/ATP carrier 2 (.1.2) Lus10016418 [exp] 60 / 4e-11 AT5G13490 612 / 0.0 ADP/ATP carrier 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00153 [poplar] [flax] Mito_carr Mitochondrial carrier protein
Representative CDS sequence Show only first row Show all	>Potri.018G062350.1 pacid=42801989 polypeptide=Potri.018G062350.1.p locus=Potri.018G062350 ID=Potri.018G062350.1.v4.1 annot-version=v4.1 ATGATCTCATGGTCAGTCTTACTTCTGCAGGATCTTTATAAAAACATCTTGCGTAATGGAAACCATCAAAACGGTTCAATTCTGTCTGGTGCACCTGCCA ACTTCATTGCAGGTGCTGCAGCTGGCTGTACAACACTGATCTTAATCTACACACTTGAGATAGCACACACCCGCCTTACTGCTGACATTGGTAGAACTGA TGTTCGTCAATTTCGAGGTATTTGCCATTTCCTGACTACCATATACAATAAAGATGGGATACGAGGAGCTTATAGAGGCCTTCCTGCATCTCTGCACGGA ATGGTTGTTCACAGGAGCCTATACTTTGGTGGGTTTGATACGTTGAAGGAGATTTTGTCTGGAGAAGCAGCTGAACCTGAATTGGCACCGTGGAAGCGTT GGGTGGTGGCTCAGGCCGTCACAACATCTGCTGGGTTGATGTCATAA
AA sequence Show only first row Show all	>Potri.018G062350.1 pacid=42801989 polypeptide=Potri.018G062350.1.p locus=Potri.018G062350 ID=Potri.018G062350.1.v4.1 annot-version=v4.1 MISWSVLLLQDLYKNILRNGNHQNGSILSGAPANFIAGAAAGCTTLILIYTLEIAHTRLTADIGRTDVRQFRGICHFLTTIYNKDGIRGAYRGLPASLHG MVVHRSLYFGGFDTLKEILSGEAAEPELAPWKRWVVAQAVTTSAGLMS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G56450		PM-ANT	Mitochondrial substrate carrie...		Potri.018G062350 [exp]	0	1
AT2G37530			unknown protein		Potri.006G083800 [exp]	6.85	0.8442
					Potri.003G010664 [exp]	9.59	0.8388
AT1G58170			Disease resistance-responsive ...		Potri.016G060801 [exp]	10.95	0.8129
AT2G24420			DNA repair ATPase-related (.1....		Potri.006G276900 [exp]	13.85	0.6520
AT3G26935			DHHC-type zinc finger family p...		Potri.015G101900 [exp]	15.68	0.6856
AT5G25810	AP2_ERF	TNY, TINY	TINY, Integrase-type DNA-bindi...		Potri.001G187500 [exp]	16.24	0.8298
AT5G36110		CYP716A1	"cytochrome P450, family 716, ...		Potri.019G078600 [exp]	16.49	0.8258
AT5G39130			RmlC-like cupins superfamily p...		Potri.013G064100 [exp]	19.10	0.8231
AT3G44990		AtXTH31, XTH31,...	XYLOGLUCAN ENDOTRANSGLUCOSYLAS...		Potri.009G006600 [exp]	20.19	0.7432	XTR8.1
AT5G39130			RmlC-like cupins superfamily p...		Potri.013G063101 [exp]	22.13	0.8195

Compare expression of checked genes

Potri.018G062350 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.