Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20635 110 / 9e-30 AGG3 Arabidopsis G protein gamma subunit 3, unknown protein AT3G63420 44 / 3e-06 AGG1, ATAGG1 Ggamma-subunit 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G141100 [exp] 167 / 2e-52 AT5G20635 120 / 2e-33 Arabidopsis G protein gamma subunit 3, unknown protein Potri.015G142500 [exp] 50 / 3e-08 AT3G22942 100 / 4e-29 G-protein gamma subunit 2 (.1) Potri.005G179600 [exp] 40 / 0.0002 AT3G63420 81 / 3e-21 Ggamma-subunit 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013155 [exp] 61 / 9e-11 AT1G54100 886 / 0.0 aldehyde dehydrogenase 7B4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00631 [poplar] [flax] G-gamma GGL domain
Representative CDS sequence Show only first row Show all	>Potri.018G062400.1 pacid=42800931 polypeptide=Potri.018G062400.1.p locus=Potri.018G062400 ID=Potri.018G062400.1.v4.1 annot-version=v4.1 ATGGCTCCTGCTACGACCTCTGTACCGTCATTACCCTCGCCTTGTCCAAAGTCACCGCGAGAGTATCCAGATTTGTATGGGAAGCGCAGGGAAATGGCTA AAGTGCAGATGCTTGAGAGAGAGATTGGTTTTTTAGAGGAGGAACTAAAATCTATTCAAGGCCTCCAGCCTGCATCTACATCCTGCAAAGAGGTCACTGA CTTTGTCATGGCAAACTCGGATCCTTTGATTCCAACAAGTCGGAAAAAACGAAGGTCTAGTCGGTTCTGGAAGTGGCTATGGGGAATACGCTGTTTTAAC TTCTCATGGATTTGTTGCTGCTGTTCTTCGGGCTGCTCTCTTCATCAAGAATGTCCAAGCTGCTGTGAATGTAATCTATGTAACTGCTCTTCCTGCATCA GCTGCCCAACTCTAAAGTGGCGGTGGTGTTGCTCTTGTCCACGTCCTAGATCCCATTGCTGTAGAAAGATCTCATGCAGCAGGAACTGCTGCTGCATTTG TCAATTACCTGCATGCCCAGATTGCTCTTGTAGCGGTTGGACATGCTCTTGTCCCGAATGTCCAAAGGTGCGCCTTTGTTGCAATTGTAAAAACACTTGT TGTAATCCATGTTTATTCTTCTAG
AA sequence Show only first row Show all	>Potri.018G062400.1 pacid=42800931 polypeptide=Potri.018G062400.1.p locus=Potri.018G062400 ID=Potri.018G062400.1.v4.1 annot-version=v4.1 MAPATTSVPSLPSPCPKSPREYPDLYGKRREMAKVQMLEREIGFLEEELKSIQGLQPASTSCKEVTDFVMANSDPLIPTSRKKRRSSRFWKWLWGIRCFN FSWICCCCSSGCSLHQECPSCCECNLCNCSSCISCPTLKWRWCCSCPRPRSHCCRKISCSRNCCCICQLPACPDCSCSGWTCSCPECPKVRLCCNCKNTC CNPCLFF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G20635		AGG3	Arabidopsis G protein gamma su...		Potri.018G062400 [exp]	0	1
					Potri.019G068802 [exp]	10.19	0.8690
AT4G10260			pfkB-like carbohydrate kinase ...		Potri.019G063600 [exp]	11.13	0.9179
					Potri.012G026150 [exp]	13.74	0.9167
AT5G19760			Mitochondrial substrate carrie...		Potri.001G004366 [exp]	20.92	0.9130
					Potri.006G127750 [exp]	23.68	0.9103
AT3G13040	GARP		myb-like HTH transcriptional r...		Potri.018G151400 [exp]	28.84	0.9067
AT1G62680			Pentatricopeptide repeat (PPR)...		Potri.019G099701 [exp]	29.59	0.9090
AT3G23770			O-Glycosyl hydrolases family 1...		Potri.001G321900 [exp]	32.98	0.9037	A6.1
AT1G64650			Major facilitator superfamily ...		Potri.001G085032 [exp]	34.14	0.8980
AT5G44120		ATCRA1, CRU1, C...	CRUCIFERINA, RmlC-like cupins ...		Potri.001G308050 [exp]	35.21	0.8840

Compare expression of checked genes

Potri.018G062400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.