Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19110 883 / 0 inter-alpha-trypsin inhibitor heavy chain-related (.1) AT1G72500 668 / 0 unknown protein AT1G08050 49 / 1e-05 Zinc finger (C3HC4-type RING finger) family protein (.1) AT3G54780 47 / 4e-05 Zinc finger (C3HC4-type RING finger) family protein (.1), Zinc finger (C3HC4-type RING finger) family protein (.2), Zinc finger (C3HC4-type RING finger) family protein (.3) AT2G38970 47 / 4e-05 Zinc finger (C3HC4-type RING finger) family protein (.1) AT5G60710 44 / 0.0006 Zinc finger (C3HC4-type RING finger) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G166800 [exp] 805 / 0 AT1G19110 753 / 0.0 inter-alpha-trypsin inhibitor heavy chain-related (.1) Potri.003G068000 [exp] 798 / 0 AT1G19110 734 / 0.0 inter-alpha-trypsin inhibitor heavy chain-related (.1) Potri.008G038450 [exp] 49 / 2e-05 AT2G38970 889 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Potri.010G223766 [exp] 47 / 7e-05 AT2G38970 892 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Potri.002G107902 [exp] 45 / 0.0003 AT5G49665 675 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039919 [exp] 952 / 0 AT1G19110 877 / 0.0 inter-alpha-trypsin inhibitor heavy chain-related (.1) Lus10027666 [exp] 949 / 0 AT1G19110 874 / 0.0 inter-alpha-trypsin inhibitor heavy chain-related (.1) Lus10008122 [exp] 760 / 0 AT1G19110 732 / 0.0 inter-alpha-trypsin inhibitor heavy chain-related (.1) Lus10013159 [exp] 725 / 0 AT1G19110 709 / 0.0 inter-alpha-trypsin inhibitor heavy chain-related (.1) Lus10023527 [exp] 45 / 0.0002 AT2G38970 887 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10040413 [exp] 45 / 0.0002 AT2G38970 846 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10028224 [exp] 43 / 0.0007 AT5G49665 286 / 5e-91 Zinc finger (C3HC4-type RING finger) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0128 [poplar] [flax] vWA-like PF13768 [poplar] [flax] VWA_3 von Willebrand factor type A domain
Representative CDS sequence Show only first row Show all	>Potri.018G062500.1 pacid=42801429 polypeptide=Potri.018G062500.1.p locus=Potri.018G062500 ID=Potri.018G062500.1.v4.1 annot-version=v4.1 ATGGCGGAGGAATTCGGAAGATCGGTTCAAGACGGGCTGAAACTGTCAAAAAGGATTTACCTGGGGAAAGACAGGGCGGTGACGCCACCCAAGCCACCGT CCCACATGGATAAATCACCAGTGGCCTATTTGCCAACGGCACCGATGGTTTATGCAGTTATATCAAACCCAGCGATTGTGGATAACCCGGATATACCAAG TTACCAGCCGCACGTGCATGGCAGATGTGACCCCCCAGCATTGATTCCTCTCCAGATGACCCGGATTGAATTGGAAGCGGATTCTTATCTGGATACTGCT TTTGTTAAAATCAGTGGATCATGGAGGGTTCATTGTGTTATGGGAAGTGAAAGCTGTGATTGCCGTCTAGCCGTCCCTATGGGCGAGCAGGGCTCAATTC TAGGTGTTGAGATTGAGGCTTCTAGAAAGTTGTATTATACGGAATTGGTTGCTATTGAAGATAGAAAAGATTTGGAAAAGGAAGTTAGGATTGAAAATGG AGGCTTTCTGAAGCCACATACATTTACCATAACGATACCCAAAGTTGACGGGGGATCAACGCTTTCCATTAAAGTTAGATGGATGCAGAAATTACTGTAC CACAATGGGGAGTTCTCCTTGATTGTGCCATTCAGTTTTCCAGAGTATGTAACTCCTCATGTAAAGAAGCTACCCAGAAAAGAAAAGATACAATTGAATG TAACCACTGGTACTGGAACTGAAATTGTGTGCAAGACAAGTAGTCATCCTTTGAAGGGATTGAGGCGTGAAGTTGGAAAACTGGGTTTCTCATATGAATC AGAAGTTCTCACTTGGACAAATATTGACTTTACTTTCTCATATGCTGTCTCTTTTAGTCATATATTTGGTGGAGTGCTTTTGCAATCTCCATCTCTTCAT GATGTTGATCAAAGAGATATGTTTTGTGCCTATCTTTTTCCTGGAGGTCATCATAGTAGGAAGGTGTTCAGAAAGGAGATAGTGTTTGTTGTTGATATAA GTGGAAGCATGGAAGGAGCACCCCTTGAGGGTACAAAGATCGCCTTATCTGCAGCACTCACAAACCTTGATTCCAAAGATTCGTTCAACATCATAGCTTT TAATGGAGAGACTTATCTTTTTTCGTCGTCAATGGAATTGGCCTCTGAAGATACAGTTGAAAGGGCTGTTGAGTGGATGAGTATGAATTTAATTGCTGGT GGTGATACAAATATCTTGGTTCCTCTAAAACAGGCAACAGAAATGCTATCAAAATCTGGAGGCTCAATTCCTTTCATCTTCCTTGTTACTGATGGGGCTG TTGAAGATGAAAGACACATTTGTGATATAATGAAAAGTCATATAACAGGCGGAGGATCGATACATCCACGTATTTGTACCTTTGGGATAGGTTCATACTG CAATCATCATTTCCTACGAATGCTTGCAATGATTAGCAGGGGTCAATATGATGCTGCCTACGACATAGATTCAGTTGAGTCTCGAATGCAAAAGTTGTTG AGCAGAATCTCATCTACAATCATTGCAAATATAACCATCAAAGCCTTTGATGATCTTGATGAAGTTGAGGTATACCCTTCTCGGATTCCAGACCTTTCTT CTGATAACCCATTGATTGTTTCAGGGAGATTTCAGGGAAACTTCCCTGACACTGTTGTAGCTACAGGTTTTTTTGGAGATTTGAGTAATTTTTCTTTAGA CTTGAAAGTACAAAAGGCAAAGGACATACCTCTTCACAGTGTTTCTGCAAAGCAGCAAATAGATCTACTCACTGCGCAGGCATGGTTTTCAGAAAATAAA CAGCTTGAGGAGAAGGTTGCCAAATTGAGTATACAAACTGGTGTTATCTCGGAATATACTTGTATGTCATTACTTGAGACTGATAGAGGAAATCAAGCGG CAGAATCACCTGGAGGGCATAAGTTACCATGGCAAGTTAATCCCCAGAAGGTAGACTCTCAAGGCCGGAGAAGAATATTTCTAAGGAACCTTGGTGTTGG TTTTGGCAATTTGACTGCAACGGCTGAAAACCTTCGTCCAGGAGCTGAAGAGTCAAAGTTGCCCGAGGCAGCAGAAATTATCATTAAGGCAGCTTCCAAT TGCTGTAGCATAATGTGTAAACAATGTTGCTGTATGTGCTGCGTCCAGTGTTGCTTCAAGATAAACAACCAATTCGCAATAGTCTTAACACAGCTCTGCA CTGCTGTAGCGTGCTTTGGCTGCATCGAGTGCTGCTCAGAAATATGTTGCGGAGGACAAGAAACATGA
AA sequence Show only first row Show all	>Potri.018G062500.1 pacid=42801429 polypeptide=Potri.018G062500.1.p locus=Potri.018G062500 ID=Potri.018G062500.1.v4.1 annot-version=v4.1 MAEEFGRSVQDGLKLSKRIYLGKDRAVTPPKPPSHMDKSPVAYLPTAPMVYAVISNPAIVDNPDIPSYQPHVHGRCDPPALIPLQMTRIELEADSYLDTA FVKISGSWRVHCVMGSESCDCRLAVPMGEQGSILGVEIEASRKLYYTELVAIEDRKDLEKEVRIENGGFLKPHTFTITIPKVDGGSTLSIKVRWMQKLLY HNGEFSLIVPFSFPEYVTPHVKKLPRKEKIQLNVTTGTGTEIVCKTSSHPLKGLRREVGKLGFSYESEVLTWTNIDFTFSYAVSFSHIFGGVLLQSPSLH DVDQRDMFCAYLFPGGHHSRKVFRKEIVFVVDISGSMEGAPLEGTKIALSAALTNLDSKDSFNIIAFNGETYLFSSSMELASEDTVERAVEWMSMNLIAG GDTNILVPLKQATEMLSKSGGSIPFIFLVTDGAVEDERHICDIMKSHITGGGSIHPRICTFGIGSYCNHHFLRMLAMISRGQYDAAYDIDSVESRMQKLL SRISSTIIANITIKAFDDLDEVEVYPSRIPDLSSDNPLIVSGRFQGNFPDTVVATGFFGDLSNFSLDLKVQKAKDIPLHSVSAKQQIDLLTAQAWFSENK QLEEKVAKLSIQTGVISEYTCMSLLETDRGNQAAESPGGHKLPWQVNPQKVDSQGRRRIFLRNLGVGFGNLTATAENLRPGAEESKLPEAAEIIIKAASN CCSIMCKQCCCMCCVQCCFKINNQFAIVLTQLCTAVACFGCIECCSEICCGGQET

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G19110			inter-alpha-trypsin inhibitor ...		Potri.018G062500 [exp]	0	1
AT5G61960		AML1	MEI2-like protein 1 (.1.2)		Potri.001G067300 [exp]	5.00	0.7704
AT3G19610			Plant protein of unknown funct...		Potri.001G294600 [exp]	10.00	0.7721
AT5G02310		PRT6, CER3	proteolysis 6 (.1)		Potri.006G085700 [exp]	10.77	0.8036
AT3G62980		AtTIR1, TIR1	TRANSPORT INHIBITOR RESPONSE 1...		Potri.014G134800 [exp]	10.95	0.7703	TIR1.2
					Potri.003G154400 [exp]	12.08	0.6919
AT5G22770		ALPHA-ADR	alpha-adaptin (.1.2.3)		Potri.004G189700 [exp]	12.44	0.7249
AT5G47400			unknown protein		Potri.001G155800 [exp]	15.19	0.7644
AT3G26000			Ribonuclease inhibitor (.1)		Potri.010G054600 [exp]	19.44	0.7663
AT1G10130		ATECA3, ECA3	ARABIDOPSIS THALIANA ER-TYPE C...		Potri.002G117400 [exp]	24.24	0.7692
AT4G12570		UPL5	ubiquitin protein ligase 5 (.1...		Potri.006G011701 [exp]	28.42	0.7664

Compare expression of checked genes

Potri.018G062500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.