Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G23070 523 / 0 Protein of unknown function (DUF300) (.1) AT4G38360 334 / 6e-111 LAZ1 LAZARUS 1, Protein of unknown function (DUF300) (.1), Protein of unknown function (DUF300) (.2) AT1G77220 317 / 2e-104 Protein of unknown function (DUF300) (.1) AT5G26740 149 / 1e-40 Protein of unknown function (DUF300) (.1), Protein of unknown function (DUF300) (.2), Protein of unknown function (DUF300) (.3) AT3G05940 140 / 2e-37 Protein of unknown function (DUF300) (.1) AT1G11200 107 / 3e-26 Protein of unknown function (DUF300) (.1) AT4G21570 103 / 7e-25 Protein of unknown function (DUF300) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G204600 [exp] 328 / 3e-108 AT4G38360 713 / 0.0 LAZARUS 1, Protein of unknown function (DUF300) (.1), Protein of unknown function (DUF300) (.2) Potri.009G165600 [exp] 323 / 3e-106 AT4G38360 717 / 0.0 LAZARUS 1, Protein of unknown function (DUF300) (.1), Protein of unknown function (DUF300) (.2) Potri.005G188200 [exp] 310 / 2e-101 AT1G77220 756 / 0.0 Protein of unknown function (DUF300) (.1) Potri.002G071400 [exp] 308 / 4e-101 AT1G77220 753 / 0.0 Protein of unknown function (DUF300) (.1) Potri.005G000600 [exp] 148 / 3e-40 AT3G05940 622 / 0.0 Protein of unknown function (DUF300) (.1) Potri.011G044200 [exp] 101 / 3e-24 AT1G11200 395 / 1e-139 Protein of unknown function (DUF300) (.1) Potri.001G405700 [exp] 100 / 7e-24 AT4G21570 421 / 2e-149 Protein of unknown function (DUF300) (.1) Potri.004G035900 [exp] 90 / 5e-20 AT1G11200 436 / 1e-155 Protein of unknown function (DUF300) (.1) Potri.005G000300 [exp] 79 / 1e-16 AT3G05940 311 / 2e-105 Protein of unknown function (DUF300) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035832 [exp] 220 / 2e-68 AT1G23070 205 / 6e-63 Protein of unknown function (DUF300) (.1) Lus10036614 [exp] 175 / 1e-51 AT1G23070 184 / 2e-55 Protein of unknown function (DUF300) (.1) Lus10022625 [exp] 150 / 2e-43 AT4G38360 296 / 7e-102 LAZARUS 1, Protein of unknown function (DUF300) (.1), Protein of unknown function (DUF300) (.2) Lus10018920 [exp] 155 / 6e-43 AT1G77220 316 / 5e-104 Protein of unknown function (DUF300) (.1) Lus10028621 [exp] 149 / 2e-40 AT1G77220 316 / 2e-103 Protein of unknown function (DUF300) (.1) Lus10001058 [exp] 144 / 1e-38 AT3G05940 675 / 0.0 Protein of unknown function (DUF300) (.1) Lus10001426 [exp] 144 / 1e-38 AT3G05940 674 / 0.0 Protein of unknown function (DUF300) (.1) Lus10003321 [exp] 135 / 5e-36 AT4G38360 321 / 2e-106 LAZARUS 1, Protein of unknown function (DUF300) (.1), Protein of unknown function (DUF300) (.2) Lus10018447 [exp] 102 / 3e-24 AT4G21570 464 / 1e-166 Protein of unknown function (DUF300) (.1) Lus10022626 [exp] 58 / 1e-09 AT4G38360 319 / 2e-108 LAZARUS 1, Protein of unknown function (DUF300) (.1), Protein of unknown function (DUF300) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03619 [poplar] [flax] Solute_trans_a Organic solute transporter Ostalpha
Representative CDS sequence Show only first row Show all	>Potri.018G062600.1 pacid=42801538 polypeptide=Potri.018G062600.1.p locus=Potri.018G062600 ID=Potri.018G062600.1.v4.1 annot-version=v4.1 ATGGCAACAGGATATGAAGATACTTACAGAGATTTGCACCAGCCAGCTGTTGTTATTGGAGGATGTTTTGCAATTGTAGCCGTGCTGCTTTCTATCTATC TCATTTTCCAGCATCTTAAATCTTACACTAATCCTGCGGAACAAAAGTGGATTGTTGCAGTTATTTTCATGGTTCCTGTCTATGCAACACAATCAATTTT ATCATTATGGAACCCAAGAATGTCTGTTGCTAGTGACATTTTAAGAAATTGCTACGAAGCATTTGCTTTGTACTCATTTGGTAGCTATTTGGTTGCTTGT TTGGGTGGGGAAAGGAGTGTAATAGAACTCCTTGAAAATGAATCGCGAGGGCAGCTCGGCATAACATTGTTGGAGCGGAGGAATGGGAATCAAGCTGTAC AAAGCAGATCTTTTACCAGCTTTTTCTTCAGGCCATATGCTATAGGAAGGGACTTGCTTACAATAGAGCGATTTGGTCTTGTACAGTATATGATTCTGAA GACATTTTGTGCATTTTTAGCATTCTTGTTGGAGCTCTTTGGGGTTTTCGGTGATGGGGAATTCAAGTGGTACTACGGGTATCCATACATAGCAGTGGTA CTCAACTTCAGCCAGATGTGGGCACTATATTGCCTCGTGCAGTTCTACAATGTAACGCACGAACGACTAAAACCAATAAAGCCACTGGCAAAGTTCGTCA GCTTCAAGGCTATTGTGTTTGCCACCTGGTGGCAAGGCCTGGGTATTGCTCTCCTTTGGGCCCTTGGAGTTCTGCCAAACGTGAAAAAACTCCGAACAGG GTTGCAAGACTTTTTGATTTGCATAGAAATGGCAATTGCAGCTGTGGCTCATATATATGTATTTTCAGCGGAACCTTATCGTTTTATTCCTGTTTCTGGG TATGGAAGGGTAACCACCGAGACAACCAAAGCAGAGATGAAGTTTGGGGGAGGTGACCAGGAGAAATCAGCTGTGTTTGAAAAGAGAGAAACTCAGGTTG CTGCTCCTGGAACAAGTGTATCTGAGAGTGTTCAAGACATAGTTCTTGAAGGCGGTCAAAGCGTTGTCAAAGATGTTGTGTTGACCATAAATCAAGCGAT AGGACCTGTAGAGAAGGGTGTTACCAAGATCCAGGAAAAAATTCACCAGAGATTTGTGGGTTCAAAAGATAAGGAAGCATCGGAATTACAAGTGGAAGAA TGTGTAGAAGAAAACCTTACTGGAGAACAAAATATATAA
AA sequence Show only first row Show all	>Potri.018G062600.1 pacid=42801538 polypeptide=Potri.018G062600.1.p locus=Potri.018G062600 ID=Potri.018G062600.1.v4.1 annot-version=v4.1 MATGYEDTYRDLHQPAVVIGGCFAIVAVLLSIYLIFQHLKSYTNPAEQKWIVAVIFMVPVYATQSILSLWNPRMSVASDILRNCYEAFALYSFGSYLVAC LGGERSVIELLENESRGQLGITLLERRNGNQAVQSRSFTSFFFRPYAIGRDLLTIERFGLVQYMILKTFCAFLAFLLELFGVFGDGEFKWYYGYPYIAVV LNFSQMWALYCLVQFYNVTHERLKPIKPLAKFVSFKAIVFATWWQGLGIALLWALGVLPNVKKLRTGLQDFLICIEMAIAAVAHIYVFSAEPYRFIPVSG YGRVTTETTKAEMKFGGGDQEKSAVFEKRETQVAAPGTSVSESVQDIVLEGGQSVVKDVVLTINQAIGPVEKGVTKIQEKIHQRFVGSKDKEASELQVEE CVEENLTGEQNI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G23070			Protein of unknown function (D...		Potri.018G062600 [exp]	0	1
AT4G12680			unknown protein		Potri.014G170800 [exp]	1.00	0.9120
AT2G36640		ATECP63	embryonic cell protein 63 (.1)		Potri.015G060600 [exp]	4.24	0.8744	ATECP63.1
AT5G06760		AtLEA4-5, LEA4-...	Late Embryogenesis Abundant 4-...		Potri.016G046350 [exp]	6.92	0.8677
AT5G50360			unknown protein		Potri.015G091900 [exp]	8.48	0.8445
AT4G21440	MYB	ATMYB102, ATM4	A. THALIANA MYB 4, MYB-like 10...		Potri.013G148600 [exp]	14.56	0.7920
AT5G22470			NAD+ ADP-ribosyltransferases;N...		Potri.009G143900 [exp]	16.24	0.8696
AT5G13170		SAG29, SWEET15,...	senescence-associated gene 29 ...		Potri.001G060900 [exp]	16.58	0.8680
AT1G54860			Glycoprotein membrane precurso...		Potri.013G023801 [exp]	17.02	0.6511
AT4G31830			unknown protein		Potri.006G183800 [exp]	18.00	0.8332
AT5G63030		GRXC1	glutaredoxin C1, Thioredoxin s...		Potri.012G082800 [exp]	20.14	0.8654

Compare expression of checked genes

Potri.018G062600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.