Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19170 790 / 0 Pectin lyase-like superfamily protein (.1) AT3G42950 787 / 0 Pectin lyase-like superfamily protein (.1) AT3G62110 402 / 2e-136 Pectin lyase-like superfamily protein (.1) AT3G48950 400 / 8e-136 Pectin lyase-like superfamily protein (.1) AT4G23820 380 / 3e-128 Pectin lyase-like superfamily protein (.1) AT2G23900 378 / 5e-127 Pectin lyase-like superfamily protein (.1) AT4G33440 377 / 1e-126 Pectin lyase-like superfamily protein (.1) AT3G61490 374 / 2e-125 Pectin lyase-like superfamily protein (.1.2.3) AT4G23500 370 / 1e-123 Pectin lyase-like superfamily protein (.1) AT5G41870 366 / 9e-123 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G139500 [exp] 948 / 0 AT3G42950 786 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.002G186900 [exp] 419 / 5e-143 AT3G62110 666 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.014G112100 [exp] 418 / 1e-142 AT3G62110 649 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.003G131700 [exp] 397 / 3e-134 AT3G61490 688 / 0.0 Pectin lyase-like superfamily protein (.1.2.3) Potri.005G063400 [exp] 394 / 5e-133 AT4G33440 652 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.017G145900 [exp] 392 / 6e-133 AT3G48950 659 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.007G105800 [exp] 387 / 2e-130 AT4G33440 642 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.001G100000 [exp] 386 / 3e-130 AT4G23500 701 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.002G162400 [exp] 374 / 2e-125 AT3G61490 734 / 0.0 Pectin lyase-like superfamily protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039909 [exp] 883 / 0 AT1G19170 775 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10027646 [exp] 747 / 0 AT3G42950 686 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10038030 [exp] 417 / 3e-142 AT3G62110 632 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10003589 [exp] 395 / 1e-133 AT4G33440 649 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10014799 [exp] 389 / 3e-131 AT4G33440 630 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10032374 [exp] 380 / 4e-128 AT4G23820 656 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10003890 [exp] 379 / 8e-128 AT4G23820 657 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10028766 [exp] 379 / 3e-127 AT3G61490 670 / 0.0 Pectin lyase-like superfamily protein (.1.2.3) Lus10039279 [exp] 377 / 2e-126 AT3G48950 624 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10027516 [exp] 375 / 1e-125 AT3G48950 629 / 0.0 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [poplar] [flax] Pec_lyase-like PF12708 [poplar] [flax] Pectate_lyase_3 Pectate lyase superfamily protein
Representative CDS sequence Show only first row Show all	>Potri.018G062700.3 pacid=42800607 polypeptide=Potri.018G062700.3.p locus=Potri.018G062700 ID=Potri.018G062700.3.v4.1 annot-version=v4.1 ATGGTAGAGACTATTGCATCTCCACTCGCCAGTCGTTTCAATTACCAGAGGCTTGACCTTAAACGCTGCGTTCCTGCTTTTTTGTCTTCTCACAAAATCC TCTTCACTCTCCTTTGGATCGCTGCCTTCGCTTCCGTCTTTTTATGGCAACGCAATGCCGTCCGTGGTGGTTTTGCCGCTTTCTGGCATGGACCCGTCCG CCCCATCCCCAAACTGCGTCCTGTGGCTTTCAATTTGACCGATTTTGGCGCCGTCGGTGATGGTGTTACTCTAAATACCGAGGCTTTTGAGAGGGCAGTT TCGGCAATTTCGAAATTGGCCAGGAGAGGTGGCGGCCAGCTTAATGTGCCTCCTGGGAAATGGTTAACGGCACCGTTTAATTTGACTAGTCATATGACTC TGTTTCTTGCTGAGGATGCTGTTATACTTGGAATTCAGGATGAGAATTATTGGCCTTTAATGCCTCCATTGCCTTCATATGGGTATGGGAGAGAGCATCC TGGACCTCGGTATGGAAGTTTAATCCACGGTCAAAACCTCAGAGATATTGTTATAACAGGACACAATGGTACCATAGATGGACAGGGTCAAACATGGTGG AAGAAGTATCGCCAAAAGCTTCTCAACCACACTAGGGGTCCCCTTGTGCAGATAATGTGGTCAAGTGACATTGTGTTTATGAACATAACACTACGCAATT CCCCATTTTGGACACTTCATCCATATGACTGCAAGAATGTAACAATTAGGAATGTTACAATTCTGGCTCCCATTTTTGAAGCCCCAAATACTGATGGAAT TGATCCTGATTCATGTGAGGATATGGTAATTGAAGACTGTTACATAAGCGTGGGGGATGATGCAATTGCAATAAAGAGCGGATGGGATCAGTATGGAATT GCATATGGACGACCTTCAACGAATATTCTCATCCGTAATCTTGTAGTTCGCTCTATGGTCAGTGCCGGCATATCAATTGGCAGTGAGATGTCAGGTGGGG TATCAAGTGTTACCGTGGAGAACCTGCTTGTGTGGAGCTCAAGGCGTGCAGTTCGGATCAAGACTGCCCCTGGAAGAGGTGCATATGTTCGAAATATAAC CTACAGGAACCTGACATTTGACGATGTAAGAGTTGGAATTGTTATCAAGACAGACTACAATGAACACCCTGATGAGGGTTATGATCCAAAGGCTGTTCCA ACACTCCAGGACATAAGCTTCAGTGGAATCCATGGCCAAGGAGTTCGTGTGCCTGTTCGCATACATGGGAGCGAAGAAATTCCAGTTAGGAATGTGACTT TTCAGGATATGTCAGTGGGGTTAACTTACAAGAAAAAGCATATATTCCAGTGCGCCTTTGTTCAAGGTCGTGTTATAGGGACGATCTTCCCTGCTCCATG TGAAAACCTTGATCGATATGATGAGCAAGGAAAGCTGGTTAAGCTCTCTGTCTCCCAAAACATAACAGACATAGATTATGATTTTTGA
AA sequence Show only first row Show all	>Potri.018G062700.3 pacid=42800607 polypeptide=Potri.018G062700.3.p locus=Potri.018G062700 ID=Potri.018G062700.3.v4.1 annot-version=v4.1 MVETIASPLASRFNYQRLDLKRCVPAFLSSHKILFTLLWIAAFASVFLWQRNAVRGGFAAFWHGPVRPIPKLRPVAFNLTDFGAVGDGVTLNTEAFERAV SAISKLARRGGGQLNVPPGKWLTAPFNLTSHMTLFLAEDAVILGIQDENYWPLMPPLPSYGYGREHPGPRYGSLIHGQNLRDIVITGHNGTIDGQGQTWW KKYRQKLLNHTRGPLVQIMWSSDIVFMNITLRNSPFWTLHPYDCKNVTIRNVTILAPIFEAPNTDGIDPDSCEDMVIEDCYISVGDDAIAIKSGWDQYGI AYGRPSTNILIRNLVVRSMVSAGISIGSEMSGGVSSVTVENLLVWSSRRAVRIKTAPGRGAYVRNITYRNLTFDDVRVGIVIKTDYNEHPDEGYDPKAVP TLQDISFSGIHGQGVRVPVRIHGSEEIPVRNVTFQDMSVGLTYKKKHIFQCAFVQGRVIGTIFPAPCENLDRYDEQGKLVKLSVSQNITDIDYDF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G19170			Pectin lyase-like superfamily ...		Potri.018G062700 [exp]	0	1
AT2G40320		TBL33	TRICHOME BIREFRINGENCE-LIKE 33...		Potri.010G184000 [exp]	1.00	0.9120
AT1G09610			Protein of unknown function (D...		Potri.019G076300 [exp]	1.73	0.8692
AT5G11730			Core-2/I-branching beta-1,6-N-...		Potri.018G059100 [exp]	2.00	0.8690
AT1G49890		QWRF2	QWRF domain containing 2, Fami...		Potri.001G295800 [exp]	4.24	0.8852
AT5G06390		FLA17	FASCICLIN-like arabinogalactan...		Potri.019G008400 [exp]	6.48	0.8649
AT5G12850	C3HZnF	PEI1	CCCH-type zinc finger protein ...		Potri.001G258400 [exp]	7.48	0.8642
AT3G62660		GATL7	galacturonosyltransferase-like...		Potri.002G200200 [exp]	8.36	0.8156
AT1G32100		ATPRR1	pinoresinol reductase 1 (.1)		Potri.003G100200 [exp]	8.83	0.8456	PCBERp8
AT3G06550		RWA2	REDUCED WALL ACETYLATION 2, O-...		Potri.010G148500 [exp]	8.94	0.8655
AT5G25830	GATA	GATA12	GATA transcription factor 12 (...		Potri.006G237700 [exp]	10.29	0.7948

Compare expression of checked genes

Potri.018G062700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.