Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20710 914 / 0 BGAL7 beta-galactosidase 7 (.1) AT1G31740 822 / 0 BGAL15 beta-galactosidase 15 (.1) AT2G28470 796 / 0 BGAL8 beta-galactosidase 8 (.1.2) AT4G36360 744 / 0 BGAL3 beta-galactosidase 3 (.1.2) AT3G13750 741 / 0 BGAL1 beta-galactosidase 1, beta galactosidase 1 (.1) AT2G32810 718 / 0 BGAL9 beta-galactosidase 9, beta galactosidase 9 (.1.2) AT5G63810 712 / 0 BGAL10 beta-galactosidase 10 (.1) AT5G56870 664 / 0 BGAL4 beta-galactosidase 4 (.1) AT1G45130 658 / 0 BGAL5 beta-galactosidase 5 (.1) AT3G52840 656 / 0 BGAL2 beta-galactosidase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G139100 [exp] 1132 / 0 AT5G20710 907 / 0.0 beta-galactosidase 7 (.1) Potri.001G025800 [exp] 937 / 0 AT5G20710 1097 / 0.0 beta-galactosidase 7 (.1) Potri.001G025701 [exp] 932 / 0 AT5G20710 1123 / 0.0 beta-galactosidase 7 (.1) Potri.009G012400 [exp] 807 / 0 AT2G28470 1281 / 0.0 beta-galactosidase 8 (.1.2) Potri.007G099800 [exp] 762 / 0 AT5G63810 1083 / 0.0 beta-galactosidase 10 (.1) Potri.006G144500 [exp] 751 / 0 AT3G13750 1260 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Potri.005G232600 [exp] 750 / 0 AT4G36360 1332 / 0.0 beta-galactosidase 3 (.1.2) Potri.001G200400 [exp] 743 / 0 AT3G13750 1471 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Potri.003G038500 [exp] 742 / 0 AT3G13750 1484 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037644 [exp] 754 / 0 AT3G13750 1432 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Lus10000701 [exp] 748 / 0 AT3G13750 1481 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Lus10015625 [exp] 744 / 0 AT3G13750 1417 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Lus10022645 [exp] 731 / 0 AT5G63810 1058 / 0.0 beta-galactosidase 10 (.1) Lus10025980 [exp] 728 / 0 AT4G36360 1422 / 0.0 beta-galactosidase 3 (.1.2) Lus10041798 [exp] 728 / 0 AT4G36360 1443 / 0.0 beta-galactosidase 3 (.1.2) Lus10003343 [exp] 717 / 0 AT5G63810 1054 / 0.0 beta-galactosidase 10 (.1) Lus10006733 [exp] 714 / 0 AT2G28470 939 / 0.0 beta-galactosidase 8 (.1.2) Lus10025108 [exp] 703 / 0 AT5G63810 949 / 0.0 beta-galactosidase 10 (.1) Lus10016655 [exp] 699 / 0 AT2G32810 1290 / 0.0 beta-galactosidase 9, beta galactosidase 9 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF01301 [poplar] [flax] Glyco_hydro_35 Glycosyl hydrolases family 35 CL0058 [poplar] [flax] PF02140 [poplar] [flax] Gal_Lectin Galactose binding lectin domain
Representative CDS sequence Show only first row Show all	>Potri.018G062800.1 pacid=42801876 polypeptide=Potri.018G062800.1.p locus=Potri.018G062800 ID=Potri.018G062800.1.v4.1 annot-version=v4.1 ATGAAGCTGTCAGGTTCTCAGATTGAAATTCTTCTTATTGCGAGTTTAGCATTGCTATGCTCAAGCTCTGCAATAACTGTTGATTATGATTCCAATGCTG TTATCATCAATGGTGAACGGAAAATCATTTTCGCCGGAGCAATTCACTATCCGCGTAGCACGCCTGAGATGTGGCCAGAGCTATTCCAGAAGGCTAAGGA AGGTGGCATTGATGCTATTGAAACTTATATCTTCTGGGACCGCCATGAGCCAGTCCGCCGGCAGGACATCGTAAAATTCTGTAAGCTCGCTCAAGAAGCT GGACTTCACGTCATTCTCCGGATTGGTCCGTATGTTTGTGCTGAATGGTCATACGGAGGCTTCCCCATGTGGCTACACAACATTCCAGGGATTGAATTGA GAACGGATAATGAGATTTACAAGAATGAGATGCAAATTTTTACCACCAAGATCGTGGACGTGTGCAAAGAAGCAAAGTTGTTTGCACCACAGGGAGGGCC TATAATTTTAGCACAGATTGAGAATGAATATGGAAACGTTATGGGACCTTATGGAGACGCAGGGAGAAGGTACGTCAATTGGTGTGCACAGATGGCAGTA GGACAGAACGTTGGAATCCCATGGATTATGTGCCAGCAGTCTAATGCTCCACAACCCATGATTAATACATGCAATGGATTTTACTGCGACCAGTTCAAGC CAAACAACCCTAAGAGTCCCAAAATGTGGACAGAAAACTGGAGTGGATGGTTCAAGCTTTGGGGTGGCAGAGATCCATATAGAACTGCTGAAGATTTGGC CTTTTCAGTGGCACGCTTTATCCAAAATGGCGGAGTCTTGAACAGCTATTATATGTATCATGGAGGAACGAATTTTGGACGCACAGCAGGAGGTCCATAC ATTACAACATCATATGACTACAATGCTCCCCTGGATGAATATGGTAATTTGAATCAGCCCAAGTGGGGTCATCTCAAGCAACTTCACGAAGCTATCAAAC AGGGGGAGAGAATTCTCACTAATGGCACCGTGACATCCAAGAATTTCTGGGGCGGGGTCGATCAAACCACATACACCAACCAAGGCACTGGAGAGAGATT CTGTTTCTTGAGCAATACAAACATGGAGGAAGCCAATGTAGACTTGGGACAAGATGGGAAGTACTCCTTGCCTGCTTGGTCTGTTACTATTCTTCAAGAT TGCAACAAAGAAATTTACAACACTGCAAAGGTTAATACCCAGACCTCAATAATGGTCAAGAAGCTACATGAGGAGGATAAACCTGTTCAACTTTCCTGGA CGTGGGCACCAGAACCCATGAAAGGTGTACTCCAAGGAAAGGGTAGATTTAGAGCCACCGAGCTTCTTGAGCAGAAAGAAACAACTGTTGATACTACTGA CTATTTGTGGTACATGACTAGCGTTAACCTTAACGAGACAACACTGAAGAAGTGGACTAATGTGACCCTGCGAGTTGGCACAAGAGGCCATACACTTCAT GCTTATGTTAACAAGAAGGAGATAGGAACCCAGTTTTCCAAGCAAGCCAACGCTCAACAATCAGTTAAGGGAGATGATTACAGTTTTCTATTTGAAAAGC CAGTTACTCTCACTTCTGGGACTAACACCATAAGCTTACTCAGTGCCACTGTTGGATTGGCTAATTATGGTCAATATTACGATAAAAAACCTGTTGGCAT TGCTGAAGGGCCCGTCCAGTTGGTAGCAAATGGGAAACCTTTTATGGACTTGACGTCATATCAGTGGTCTTACAAGATTGGGTTGAGCGGTGAGGCCAAA AGATACAATGATCCAAATTCGCCACATGCCAGTAAATTTACTGCCAGTGATAACCTTCCTACCGGAAGAGCCATGACATGGTACAAGACCACATTTGCCA GTCCTTCAGGTACTGAACCAGTAGTGGTAGACTTGCTAGGCATGGGCAAAGGGCATGCCTGGGTGAATGGAAAAAGCCTTGGTCGCTTCTGGCCTACGCA AATTGCTGATGCCAAAGGATGCCCTGACACTTGTGACTACCGTGGATCTTATAATGGTGATAAATGTGTGACGAACTGTGGCAATCCTTCTCAAAGATGG TACCATATCCCAAGGTCATACCTTAATAAGGATGGCCAAAACACCTTGATCTTGTTTGAGGAAGTGGGCGGGAACCCTACAAATGTGTCGTTCCAGATTG TTGCTGTGGAGACAATATGTGGAAATGCATATGAAGGAAGCACATTAGAATTGTCATGCGAAGGTGGCAGAACCATCTCAGACATTCAATTCGCCAGCTA TGGAGACCCTGAGGGAACATGCGGCGCATTCATGAAGGGCTCCTTCTACGCCACTCGCAGTGCGGCAGTAGTGGAAAAGGCATGTGTTGGGAAACAGAGC TGTGGAATTCTTGTTTCAGGTGAAACATTTGGATTAAAGAAGCGTTCTGACATTGCCAATAGGCTGGCGGTGCAAGCTGTCTGCACTGGGTACATTGACA ACGATCTCGAGTCCCTAAAGAATAAGAATAACAACTCAAAACAATGA
AA sequence Show only first row Show all	>Potri.018G062800.1 pacid=42801876 polypeptide=Potri.018G062800.1.p locus=Potri.018G062800 ID=Potri.018G062800.1.v4.1 annot-version=v4.1 MKLSGSQIEILLIASLALLCSSSAITVDYDSNAVIINGERKIIFAGAIHYPRSTPEMWPELFQKAKEGGIDAIETYIFWDRHEPVRRQDIVKFCKLAQEA GLHVILRIGPYVCAEWSYGGFPMWLHNIPGIELRTDNEIYKNEMQIFTTKIVDVCKEAKLFAPQGGPIILAQIENEYGNVMGPYGDAGRRYVNWCAQMAV GQNVGIPWIMCQQSNAPQPMINTCNGFYCDQFKPNNPKSPKMWTENWSGWFKLWGGRDPYRTAEDLAFSVARFIQNGGVLNSYYMYHGGTNFGRTAGGPY ITTSYDYNAPLDEYGNLNQPKWGHLKQLHEAIKQGERILTNGTVTSKNFWGGVDQTTYTNQGTGERFCFLSNTNMEEANVDLGQDGKYSLPAWSVTILQD CNKEIYNTAKVNTQTSIMVKKLHEEDKPVQLSWTWAPEPMKGVLQGKGRFRATELLEQKETTVDTTDYLWYMTSVNLNETTLKKWTNVTLRVGTRGHTLH AYVNKKEIGTQFSKQANAQQSVKGDDYSFLFEKPVTLTSGTNTISLLSATVGLANYGQYYDKKPVGIAEGPVQLVANGKPFMDLTSYQWSYKIGLSGEAK RYNDPNSPHASKFTASDNLPTGRAMTWYKTTFASPSGTEPVVVDLLGMGKGHAWVNGKSLGRFWPTQIADAKGCPDTCDYRGSYNGDKCVTNCGNPSQRW YHIPRSYLNKDGQNTLILFEEVGGNPTNVSFQIVAVETICGNAYEGSTLELSCEGGRTISDIQFASYGDPEGTCGAFMKGSFYATRSAAVVEKACVGKQS CGILVSGETFGLKKRSDIANRLAVQAVCTGYIDNDLESLKNKNNNSKQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G20710		BGAL7	beta-galactosidase 7 (.1)		Potri.018G062800 [exp]	0	1
AT1G43730			RNA-directed DNA polymerase (r...		Potri.016G103750 [exp]	4.00	1.0000
AT4G25760		ATGDU2	glutamine dumper 2 (.1)		Potri.004G108560 [exp]	7.34	0.7541
AT5G12000			Protein kinase protein with ad...		Potri.001G198300 [exp]	7.74	0.7817
AT4G27650		PEL1	PELOTA, Eukaryotic release fac...		Potri.004G092600 [exp]	7.74	0.8080
AT3G08690		ATUBC11, UBC11	ubiquitin-conjugating enzyme 1...		Potri.008G134400 [exp]	9.89	0.7723	Pt-UBC.3
AT5G25160	C2H2ZnF	ZFP3	zinc finger protein 3 (.1)		Potri.003G192000 [exp]	10.67	0.4945
AT2G44810		DAD1	DEFECTIVE ANTHER DEHISCENCE 1,...		Potri.002G137900 [exp]	11.83	0.6488
AT1G57775			Protein of unknown function (D...		Potri.004G110600 [exp]	11.83	0.7233
					Potri.010G154250 [exp]	13.22	0.6663
AT5G59970			Histone superfamily protein (....		Potri.002G143850 [exp]	13.49	0.6607

Compare expression of checked genes

Potri.018G062800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.