Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74960 715 / 0 ATKAS2, KAS2, FAB1 ARABIDOPSIS BETA-KETOACYL-ACP SYNTHETASE 2, fatty acid biosynthesis 1 (.1.2.3) AT5G46290 442 / 2e-151 KAS1, KAS I, KASI KETOACYL-ACP SYNTHASE 1, 3-ketoacyl-acyl carrier protein synthase I (.1.2.3) AT2G04540 207 / 1e-60 Beta-ketoacyl synthase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G138000 [exp] 868 / 0 AT1G74960 714 / 0.0 ARABIDOPSIS BETA-KETOACYL-ACP SYNTHETASE 2, fatty acid biosynthesis 1 (.1.2.3) Potri.004G131500 [exp] 440 / 2e-150 AT5G46290 795 / 0.0 KETOACYL-ACP SYNTHASE 1, 3-ketoacyl-acyl carrier protein synthase I (.1.2.3) Potri.011G079700 [exp] 437 / 2e-149 AT5G46290 779 / 0.0 KETOACYL-ACP SYNTHASE 1, 3-ketoacyl-acyl carrier protein synthase I (.1.2.3) Potri.001G088700 [exp] 430 / 4e-146 AT5G46290 659 / 0.0 KETOACYL-ACP SYNTHASE 1, 3-ketoacyl-acyl carrier protein synthase I (.1.2.3) Potri.003G142000 [exp] 418 / 1e-141 AT5G46290 668 / 0.0 KETOACYL-ACP SYNTHASE 1, 3-ketoacyl-acyl carrier protein synthase I (.1.2.3) Potri.002G219500 [exp] 204 / 3e-59 AT2G04540 640 / 0.0 Beta-ketoacyl synthase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034886 [exp] 767 / 0 AT1G74960 821 / 0.0 ARABIDOPSIS BETA-KETOACYL-ACP SYNTHETASE 2, fatty acid biosynthesis 1 (.1.2.3) Lus10033422 [exp] 700 / 0 AT1G74960 716 / 0.0 ARABIDOPSIS BETA-KETOACYL-ACP SYNTHETASE 2, fatty acid biosynthesis 1 (.1.2.3) Lus10040883 [exp] 449 / 7e-154 AT5G46290 809 / 0.0 KETOACYL-ACP SYNTHASE 1, 3-ketoacyl-acyl carrier protein synthase I (.1.2.3) Lus10025390 [exp] 436 / 7e-149 AT5G46290 803 / 0.0 KETOACYL-ACP SYNTHASE 1, 3-ketoacyl-acyl carrier protein synthase I (.1.2.3) Lus10015267 [exp] 438 / 1e-140 AT5G46280 1098 / 0.0 MINICHROMOSOME MAINTENANCE 3, Minichromosome maintenance (MCM2/3/5) family protein (.1) Lus10001814 [exp] 412 / 1e-137 AT5G46290 714 / 0.0 KETOACYL-ACP SYNTHASE 1, 3-ketoacyl-acyl carrier protein synthase I (.1.2.3) Lus10003195 [exp] 408 / 1e-137 AT5G46290 717 / 0.0 KETOACYL-ACP SYNTHASE 1, 3-ketoacyl-acyl carrier protein synthase I (.1.2.3) Lus10004935 [exp] 348 / 5e-116 AT5G46290 606 / 0.0 KETOACYL-ACP SYNTHASE 1, 3-ketoacyl-acyl carrier protein synthase I (.1.2.3) Lus10014622 [exp] 212 / 4e-62 AT2G04540 701 / 0.0 Beta-ketoacyl synthase (.1) Lus10033810 [exp] 192 / 2e-54 AT2G04540 705 / 0.0 Beta-ketoacyl synthase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0046 [poplar] [flax] Thiolase PF00109 [poplar] [flax] ketoacyl-synt Beta-ketoacyl synthase, N-terminal domain CL0046 [poplar] [flax] Thiolase PF02801 [poplar] [flax] Ketoacyl-synt_C Beta-ketoacyl synthase, C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.018G062900.6 pacid=42801495 polypeptide=Potri.018G062900.6.p locus=Potri.018G062900 ID=Potri.018G062900.6.v4.1 annot-version=v4.1 ATGACGGGGTCAGCTTCATTGTCATCTCCGCTGTGCACGTGGCTGTTCGCGGCTTGCATGTCGGTCACGTGCGCTAAGGAAAGCGCACACCCGTTGTCTC CACCGTCGTATAATTCTAGTCGCAGACGGAAGGCTAAGTCGGCTGCTCTTCCTATGAAATGCTGCAGCAGCAGCAGCAGCAGCAGCAGCGGTATTAGGGG AATAGTCCATTCTTCTCCTTCAAATGACAACACTAACAATAAAAGTACGTTGAGTTTTAAAGGATTAATGAGCTCTTGTTTGGCTGATGAACCTTGTAGC AGTTACTACGCTTCTGGTGGACTCTTGAGACGACGACTCAGTCCCCCCGCTACTTCCGGGCAAGCCATGGCTGTAGCTGTGCAACCTACAAGGGAAGTGG AGACAAAAAAGAAACCACTTACGAGGCAAAGGCGAGTAGTTGTGACAGGGATGGGTGTGGTCTCACCTCTTGGTCATGATCCAGGTGTCTTCTACAATAA TCTTCTCCAAGGTGTAAGCGGTGTGACTCGGATAGAGGCTTTTGACTGTGCTCAATTTCCCACGAGAATTGCTGGAGAAATCAAGTCTTTCTCAACTGAT GGATGGGTTGCTCCAAAATTGTCGAAGAGAATGGATAAATTCATGCTTTACATGCTTACTGCTGGCAAAAAAGCCTTGGCGGATGGAGGGATTACTGAGG ATGTGATGGATGAATTGAATAAAACGAAGTGTGGAGTTTTGATTGGCTCAGCAATGGGTGGGATGAAGGTTTTCAATGATGCAATTGAAGCTTTAAGGAT CTCATACAAGAAGATGAATCCTTTCTGTGTTCCTTTTGCAACTACAAATATGGGTTCTGCCATGCTTGCAATGGATCTGGGATGGATGGGACCAAATTAT TCAATTTCCACTGCTTGTGCAACCAGCAACTTTTGTATATTGAATGCAGCAAACCATATCATTAGAGGCGAAGCTGATGTTATGCTTTGTGGTGGCTCTG ACGCAGCAATTATTCCTATAGGGTTGGGGGGTTTTGTGGCATGCAGAGCACTTTCTCAGAGGAATGATGATCCAACAAGAGCTTCACGGCCTTGGGACAT GAATCGGGATGGATTTGTCATGGGGGAAGGAGCTGGTGTTCTGCTTCTAGAAGAATTAGAACATGCTAAGAAAAGAGGTGCCAATATCCATGCAGAATTT CTTGGAGGGAGCTTTACATGTGATGCCTATCATATGACTGAGCCACGTCCTGATGGGGTTGGTGTGATTCTCTGCATAGAGAAGGCATTATCACAGTCTG GGATATCCAAAGAGGATGTGAATTACATAAATGCACATGCTACATCCACACCGGCAGGTGACCTCAAAGAGTATCAAGCTCTCATGCATTGTTTTGGCCA GAATTCTGGTTTGAGGGTGAACGCAACAAAATCCATGATTGGTCACTTACTGGGAGCAGCTGGTGCTGTGGAAGCCATAGCCGCAATACAGGCAATACGG ACAGGATGGGTTCATCCAAATATCAATCTAGAAAATCCAGATCAAGGCGTGGACACGAGTGTATTAGTGGGCCCGAAGAAAGAGAGACTAGACATTAAGG CTGCGTTATCTAATTCATTTGGGTTTGGTGGCCACAACTCATCGATCATTTTTGCCCCATTCAAGTGA
AA sequence Show only first row Show all	>Potri.018G062900.6 pacid=42801495 polypeptide=Potri.018G062900.6.p locus=Potri.018G062900 ID=Potri.018G062900.6.v4.1 annot-version=v4.1 MTGSASLSSPLCTWLFAACMSVTCAKESAHPLSPPSYNSSRRRKAKSAALPMKCCSSSSSSSSGIRGIVHSSPSNDNTNNKSTLSFKGLMSSCLADEPCS SYYASGGLLRRRLSPPATSGQAMAVAVQPTREVETKKKPLTRQRRVVVTGMGVVSPLGHDPGVFYNNLLQGVSGVTRIEAFDCAQFPTRIAGEIKSFSTD GWVAPKLSKRMDKFMLYMLTAGKKALADGGITEDVMDELNKTKCGVLIGSAMGGMKVFNDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNY SISTACATSNFCILNAANHIIRGEADVMLCGGSDAAIIPIGLGGFVACRALSQRNDDPTRASRPWDMNRDGFVMGEGAGVLLLEELEHAKKRGANIHAEF LGGSFTCDAYHMTEPRPDGVGVILCIEKALSQSGISKEDVNYINAHATSTPAGDLKEYQALMHCFGQNSGLRVNATKSMIGHLLGAAGAVEAIAAIQAIR TGWVHPNINLENPDQGVDTSVLVGPKKERLDIKAALSNSFGFGGHNSSIIFAPFK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G74960		ATKAS2, KAS2, F...	ARABIDOPSIS BETA-KETOACYL-ACP ...		Potri.018G062900 [exp]	0	1
AT3G46450			SEC14 cytosolic factor family ...		Potri.001G237400 [exp]	3.60	0.7599
AT1G28590			GDSL-like Lipase/Acylhydrolase...		Potri.004G054300 [exp]	5.56	0.8169
AT1G56130			Leucine-rich repeat transmembr...		Potri.006G255100 [exp]	6.92	0.7895
AT3G54140		ATPTR1	ARABIDOPSIS THALIANA PEPTIDE T...		Potri.016G111800 [exp]	7.48	0.7979
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Potri.008G064000 [exp]	12.32	0.7887	LAC2.1,LAC2
AT1G22110			structural constituent of ribo...		Potri.002G092000 [exp]	12.96	0.7813
AT5G09400		KUP7	K+ uptake permease 7, K+ uptak...		Potri.001G205500 [exp]	14.86	0.7452	KUP7.1
AT1G09890			Rhamnogalacturonate lyase fami...		Potri.002G110100 [exp]	15.87	0.7581
AT2G40470	AS2	ASL11, LBD15	ASYMMETRIC LEAVES2-LIKE 11, LO...		Potri.013G081200 [exp]	17.46	0.7833
					Potri.003G098301 [exp]	18.97	0.7706

Compare expression of checked genes

Potri.018G062900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.