Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	NPH4.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19220 735 / 0 ARF IAA22, ARF11, ARF19 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) AT5G20730 709 / 0 ARF MSG1, IAA21, BIP, ARF7, IAA25, IAA23, TIR5, NPH4 MASSUGU 1, indole-3-acetic acid inducible 25, indole-3-acetic acid inducible 23, indole-3-acetic acid inducible 21, BIPOSTO, AUXIN RESPONSE FACTOR 7, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1.2.3) AT1G30330 491 / 4e-157 ARF ARF6 auxin response factor 6 (.1.2) AT5G37020 471 / 2e-151 ARF ARF8, ATARF8 auxin response factor 8 (.1.2) AT1G19850 456 / 3e-144 ARF IAA24, ARF5, MP MONOPTEROS, indole-3-acetic acid inducible 24, AUXIN RESPONSE FACTOR 5, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1) AT5G62000 345 / 2e-103 ARF ORE14, HSS, ARF1-BP, ARF2 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) AT1G59750 317 / 6e-95 ARF ARF1 auxin response factor 1 (.1.2.3.4) AT5G60450 318 / 3e-94 ARF ARF4 auxin response factor 4 (.1) AT2G33860 301 / 6e-90 ARF ARF3, ETT ETTIN, AUXIN RESPONSE TRANSCRIPTION FACTOR 3, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1) AT4G23980 301 / 2e-89 ARF ARF9 auxin response factor 9 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G138500 [exp] 845 / 0 AT1G19220 734 / 0.0 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) Potri.006G077800 [exp] 595 / 0 AT1G19220 664 / 0.0 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) Potri.018G145800 [exp] 588 / 0 AT1G19220 665 / 0.0 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) Potri.004G078200 [exp] 488 / 2e-157 AT5G37020 1057 / 0.0 auxin response factor 8 (.1.2) Potri.002G055000 [exp] 491 / 3e-157 AT1G30330 775 / 0.0 auxin response factor 6 (.1.2) Potri.001G358500 [exp] 490 / 3e-157 AT1G30330 818 / 0.0 auxin response factor 6 (.1.2) Potri.005G207700 [exp] 490 / 5e-157 AT5G37020 694 / 0.0 auxin response factor 8 (.1.2) Potri.011G091900 [exp] 487 / 5e-156 AT1G30330 830 / 0.0 auxin response factor 6 (.1.2) Potri.017G141000 [exp] 481 / 6e-155 AT5G37020 1048 / 0.0 auxin response factor 8 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033635 [exp] 732 / 0 AT5G20730 741 / 0.0 MASSUGU 1, indole-3-acetic acid inducible 25, indole-3-acetic acid inducible 23, indole-3-acetic acid inducible 21, BIPOSTO, AUXIN RESPONSE FACTOR 7, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1.2.3) Lus10027600 [exp] 583 / 0 AT1G19220 670 / 0.0 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) Lus10017680 [exp] 503 / 3e-169 AT1G19220 550 / 0.0 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) Lus10022943 [exp] 492 / 2e-156 AT1G19220 546 / 4e-177 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) Lus10033598 [exp] 483 / 7e-156 AT5G37020 799 / 0.0 auxin response factor 8 (.1.2) Lus10033597 [exp] 485 / 1e-155 AT1G19220 842 / 0.0 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) Lus10031354 [exp] 481 / 7e-155 AT5G37020 1013 / 0.0 auxin response factor 8 (.1.2) Lus10010969 [exp] 479 / 2e-154 AT5G37020 1013 / 0.0 auxin response factor 8 (.1.2) Lus10024320 [exp] 475 / 6e-154 AT1G19850 724 / 0.0 MONOPTEROS, indole-3-acetic acid inducible 24, AUXIN RESPONSE FACTOR 5, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1) Lus10007386 [exp] 476 / 1e-152 AT5G37020 1021 / 0.0 auxin response factor 8 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [poplar] [flax] Ubiquitin PF02309 [poplar] [flax] AUX_IAA AUX/IAA family CL0405 [poplar] [flax] DNA_b-psBarrel PF02362 [poplar] [flax] B3 B3 DNA binding domain CL0405 [poplar] [flax] PF06507 [poplar] [flax] Auxin_resp Auxin response factor
Representative CDS sequence Show only first row Show all	>Potri.018G063000.1 pacid=42800384 polypeptide=Potri.018G063000.1.p locus=Potri.018G063000 ID=Potri.018G063000.1.v4.1 annot-version=v4.1 ATGAAGGTTCCTTCAAATGGGTTCTTGCCAAATTCTGCAGAAGGAGAAAGAAAGAGTATCAATTCAGAGTTGTGGCATGCTTGTGCTGGGCCACTGGTTT CCTTGCCTCCAGTTGGAAGCCTTGTAGTTTACTTCCCTCAAGGTCACAGTGAGCAGGTTGCAGCTTCAATGCAAAAGGAGACTGATTTCGTACCAAGTTA CCCCAACCTTACTTCCAAGTTGATTTGCATGCTTCATAATGTCACATTGCATGCTGATGTGGAAACTGATGAGGTCTATGCACAAATGACCCTTCAACCA GTAAGCAAATATGACAAGGAAGCATTACTGGCATCTGACCTGGGGCAAAAGCAGAGCAGGCAACCTACAGAGTTCTTCTGCAAAACTCTTACAGCTAGTG ACACAAGTACTCACGGTGGATTTTTTGTACCTCGTCGAGCAGCCGAGAAGATTTTCCCTCCTCTAGACTTTTCAATGCAACCACCTGCTCAAGAGCTGGT AGCCAGAGACTTACATGATAATACATGGACATTTAGGCATATTTATCGAGGGCAACCCAAAAGGCACCTGCTCACTACAGGTTGGAGTGTCTTTGTCAGC ACAAAAAGAATTTTCACAGGTGATTCCGTTCTATTCATAAGAGATGAAAAATCACAGCTTCTCTTGGGTATAAGGCATGCTAATAGACAACAACCAGCTC TCTCTTCGTCACTTATATCCAGTGATAGTATGCATATTGGAATTCTTGCTGCTGCAGCTCATGCTGCTGCAAACAACAGCCCATTTACTATATTTTACAA CCCAAGTGCAAGCCCTTCTGAGTTTGTGATCCCCTTCTCCAAGTATAATAAAGCTATGTATACGCAAGGGTCACTTGGCATGAGATTTAGAATGATGTTT ACGACTGAAGAGTCAGGAGTGCGTAGATACATGGGTACAATCACTGGTATCAGTGATTTGGATCCAGTGCGCTGGAAAAATTCACAGTGGCGCAATCTTC AGGTTGGGTGGGATGAATCAACTGCCAGTGAACGGCCAAACAGAGTTTCGATTTGGGAGATTGAGCCTGTTGTAACTCCTTTCTACATATGTCCACCTCC ATTTTTCAGACCAAAGTTCCCTAAGCAGCCAGGGATGCCAAATGACGAGTCTGATACAGAGAATGCTTTTAAAAGAGCCGTGCCTTGGCTTGGAGATGAA TTTGGCAAGAAGGATGCCGCAAGCTCAATCTTTCCTGGTTTGAGCTTAGTTCAATGGATGAGCATGCAGCAAAATAATCAGTTTCAAGCTGCTCAATCAG GATTCTTCCCACCAATGGTTCCTTCCAATGACCTGCAGAAAAACCTTAGCACTGATGATCCATCAAAGTTATTGAATTTTCAAGCTCCTGGCCTATCTGC TCCAAGCATACAATTTAACAAAACAAATTCAGAAAACCAAGTCGGTCAGTTACGTCGGCCACCAATGGCATGGACTCAACAACAGCAGCTGCAGCAATTA TTGCAGACTTCCATTAACCAACAGCAGCCACCTTATCCCCAACAGCCGCAGCCACAGCTGCAGCAGTCTATTTCTCAAGAGCAACATCATGAGCATCAGC ATCGACCACAACCACAGCAACAGCCGCAGCCACAGCTGCAGCCACAACAAATACAACAACTGCCACCACAATGGCAACAGCTTCAACAGCTTCAGCAGCA GATTTTCCAACCACCTGCCTTAAATGACAGTGTGGTTTCTCCTAATCAGATTCCAAATCAGAATTTTCAGAAACCATTTGTATACTCCCAGCAGCAGCAG CAGCAACAACAGCAGTTACTGGCAAGCAATATCCAATCCCAAAGCATCCCTTCTCCTAATAGAAGTTCATATCAGCTGACCTCTTTACCACAAGACTCGC AGTTTCATCAACAAATGGAGCAGCAATCTAACTTCTCTCACAGACAACAGACACAGTTGCAACAGTCCCCACTCCTGTTGTTACAACAAAACCCATCACA GAGGGTGCAGCCACAGCCACATCAACAAATACAGCAACTATCACAGCCTGACAACTCTGAGCAACAGCTTCATTTACAGTTGCTACAGAACTTACAGCAG CAGCAGCAGCAGCAGCTGCTCTCCCCTGAAAGCTTACTTCTGCAGTCTCAGAAGCTACAGCAGCAGCAGCAGACCCATCAGCAAAACCAGCAACTTCATC AGTCACCTCTGACACAGAATCAGCAGCCACTTGGCAGCAACAGCTTCCCAACAGCAGCAGCACTCATGCGAACACAATCTTTTCCTATGAACCAGCTCCA AGGCATGCAGAACGCAACCATGGCAGTTAGATACCATTCAAGTATTACAGATGGAGAAGCGCCATCTTGTTCAACCTCACCTTCCACTAATAATTGGCAG ATTTCTCCACTAAATTTCCTGAACAGAAACCAACAAGCTCCAGCCATGTTGATGGGTGATTCAGCTATTGAGCCTGCAAGTAATCTTGTTCAAGAACTCC AAAGCAAGTCTGAAATTCACATCAAGAACGAGTTTCCCAGCTTGAAAGGTCTAGACCAACTAAAATATAAAGGTACTGTGACTGATCAATTGGAAGCTTC GTCTTCTGGAACATCGTATTGCCTAGATGCTGGTACCATCCAGCAGAATTTCTCAGCCCCAACCTTTGGCTTGGATGGCGATGTCCAATCACATCCTGCA TCTAATATCGATGCATTGGCACCTGATACTCTATTATCAAGGGAATATGACTCTCAAAAGGATCTTCAGAACTTGCTTGTTAATTATGGTGGTACCGCAC AAGATATCAACATGGAGTTGTCCACTGCTGCAATTAGCGCTCAGTCATTTGGTGTATCAAACATACCTTTCAAGCCTGATGGTTCAAACGACATTGCCAT CAATGATACTGGGATTTTGAACAATGGAGCCTGGACCAACCAGAATCAACGAATGCGTACATATACAAAGGTCCAAAAGCGTGGCTCAGTTGGAAGATCT ATTGACATCACCTGTTATAAAGGTTATGACGAGCTTAGACATGATCTGGCCCGAATGTTTGGCATTGAAGGGCAACTTGAAGATCCACAAAGTTCGGATT GGAAACTGGTATATGTTGATCGTGAAAATGACATATTACTTGTTGGTGACGATCCTTGGGAGGAGTTCATGAGCTGTGTTCAGAGCATAAAAATACTGTC ATCTGCTGAAGTGCAACAGATGAGCTTGGATGGAGATCTTGGTAATGTGCCAGCTCCCAATCAAGCTTGTAGTGGCACTGACAGTGGGAATGTCTGGAGG GGGCAGTAA
AA sequence Show only first row Show all	>Potri.018G063000.1 pacid=42800384 polypeptide=Potri.018G063000.1.p locus=Potri.018G063000 ID=Potri.018G063000.1.v4.1 annot-version=v4.1 MKVPSNGFLPNSAEGERKSINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMQKETDFVPSYPNLTSKLICMLHNVTLHADVETDEVYAQMTLQP VSKYDKEALLASDLGQKQSRQPTEFFCKTLTASDTSTHGGFFVPRRAAEKIFPPLDFSMQPPAQELVARDLHDNTWTFRHIYRGQPKRHLLTTGWSVFVS TKRIFTGDSVLFIRDEKSQLLLGIRHANRQQPALSSSLISSDSMHIGILAAAAHAAANNSPFTIFYNPSASPSEFVIPFSKYNKAMYTQGSLGMRFRMMF TTEESGVRRYMGTITGISDLDPVRWKNSQWRNLQVGWDESTASERPNRVSIWEIEPVVTPFYICPPPFFRPKFPKQPGMPNDESDTENAFKRAVPWLGDE FGKKDAASSIFPGLSLVQWMSMQQNNQFQAAQSGFFPPMVPSNDLQKNLSTDDPSKLLNFQAPGLSAPSIQFNKTNSENQVGQLRRPPMAWTQQQQLQQL LQTSINQQQPPYPQQPQPQLQQSISQEQHHEHQHRPQPQQQPQPQLQPQQIQQLPPQWQQLQQLQQQIFQPPALNDSVVSPNQIPNQNFQKPFVYSQQQQ QQQQQLLASNIQSQSIPSPNRSSYQLTSLPQDSQFHQQMEQQSNFSHRQQTQLQQSPLLLLQQNPSQRVQPQPHQQIQQLSQPDNSEQQLHLQLLQNLQQ QQQQQLLSPESLLLQSQKLQQQQQTHQQNQQLHQSPLTQNQQPLGSNSFPTAAALMRTQSFPMNQLQGMQNATMAVRYHSSITDGEAPSCSTSPSTNNWQ ISPLNFLNRNQQAPAMLMGDSAIEPASNLVQELQSKSEIHIKNEFPSLKGLDQLKYKGTVTDQLEASSSGTSYCLDAGTIQQNFSAPTFGLDGDVQSHPA SNIDALAPDTLLSREYDSQKDLQNLLVNYGGTAQDINMELSTAAISAQSFGVSNIPFKPDGSNDIAINDTGILNNGAWTNQNQRMRTYTKVQKRGSVGRS IDITCYKGYDELRHDLARMFGIEGQLEDPQSSDWKLVYVDRENDILLVGDDPWEEFMSCVQSIKILSSAEVQQMSLDGDLGNVPAPNQACSGTDSGNVWR GQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G19220	ARF	IAA22, ARF11, A...	indole-3-acetic acid inducible...		Potri.018G063000 [exp]	0	1	NPH4.1
AT1G16800			P-loop containing nucleoside t...		Potri.010G253700 [exp]	1.41	0.8831
AT1G31810		AFH14	Formin Homology 14 (.1)		Potri.003G103800 [exp]	3.16	0.8510
AT3G21480			BRCT domain-containing DNA rep...		Potri.010G014700 [exp]	4.58	0.8338
AT4G36920	AP2_ERF	FL1, FLO2, AP2	FLORAL MUTANT 2, FLOWER 1, APE...		Potri.007G046200 [exp]	4.89	0.8384	AP2.15,RAP2
AT5G58160			actin binding (.1)		Potri.018G108000 [exp]	6.32	0.8164
AT5G64150			RNA methyltransferase family p...		Potri.018G000850 [exp]	7.00	0.7681
AT4G11670			Protein of unknown function (D...		Potri.001G108400 [exp]	7.93	0.7959
AT2G02970			GDA1/CD39 nucleoside phosphata...		Potri.009G157500 [exp]	11.61	0.7706
AT3G57300		ATINO80	INO80 ortholog (.1.2)		Potri.006G047100 [exp]	13.85	0.8446
AT4G02590	bHLH	bHLH059, UNE12	unfertilized embryo sac 12, ba...		Potri.002G045400 [exp]	16.97	0.7756

Compare expression of checked genes

Potri.018G063000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.