Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-PRXQ.2,PtrcPrx_Q.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26060 275 / 2e-94 ATPRXQ ,ATPRX Q peroxiredoxin Q, Thioredoxin superfamily protein (.1.2) AT5G06290 81 / 4e-18 2CPB, 2-CysPrxB ,2-Cys Prx B 2-CYS PEROXIREDOXIN B, 2-cysteine peroxiredoxin B (.1) AT3G11630 77 / 5e-17 Thioredoxin superfamily protein (.1) AT1G48130 51 / 1e-07 ATPER1 1-cysteine peroxiredoxin 1 (.1) AT4G31870 40 / 0.0005 ATGPX7 glutathione peroxidase 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G137500 [exp] 334 / 6e-118 AT3G26060 286 / 5e-99 peroxiredoxin Q, Thioredoxin superfamily protein (.1.2) Potri.006G204900 [exp] 83 / 4e-19 AT5G06290 385 / 2e-136 2-CYS PEROXIREDOXIN B, 2-cysteine peroxiredoxin B (.1) Potri.016G072100 [exp] 79 / 1e-17 AT5G06290 390 / 3e-138 2-CYS PEROXIREDOXIN B, 2-cysteine peroxiredoxin B (.1) Potri.008G099900 [exp] 43 / 6e-05 AT1G48130 322 / 2e-111 1-cysteine peroxiredoxin 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034892 [exp] 295 / 2e-102 AT3G26060 281 / 6e-97 peroxiredoxin Q, Thioredoxin superfamily protein (.1.2) Lus10033424 [exp] 294 / 3e-102 AT3G26060 278 / 1e-95 peroxiredoxin Q, Thioredoxin superfamily protein (.1.2) Lus10021295 [exp] 82 / 9e-19 AT5G06290 404 / 6e-144 2-CYS PEROXIREDOXIN B, 2-cysteine peroxiredoxin B (.1) Lus10016969 [exp] 82 / 9e-19 AT5G06290 403 / 2e-143 2-CYS PEROXIREDOXIN B, 2-cysteine peroxiredoxin B (.1) Lus10018342 [exp] 45 / 8e-06 AT1G48130 338 / 2e-119 1-cysteine peroxiredoxin 1 (.1) Lus10017112 [exp] 44 / 3e-05 AT1G48130 335 / 3e-118 1-cysteine peroxiredoxin 1 (.1) Lus10026887 [exp] 42 / 0.0001 AT4G31870 332 / 3e-116 glutathione peroxidase 7 (.1) Lus10003421 [exp] 42 / 0.0002 AT4G31870 319 / 9e-110 glutathione peroxidase 7 (.1) Lus10042418 [exp] 40 / 0.0009 AT4G31870 329 / 2e-115 glutathione peroxidase 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [poplar] [flax] Thioredoxin PF08534 [poplar] [flax] Redoxin Redoxin
Representative CDS sequence Show only first row Show all	>Potri.018G063300.1 pacid=42801017 polypeptide=Potri.018G063300.1.p locus=Potri.018G063300 ID=Potri.018G063300.1.v4.1 annot-version=v4.1 ATGGTTTCTATTTCTCTGCCTAACCACTCTCTACCCTCTCTACTTCCCACTCACAAACCCAAAAACCTATCTTCTCAAAACCTCCCAATTCTGTCCAAGT CATCACGGTCACAGTTCTATGGCCTCAAGTTTTCCCATTCTAGTTCTCTGTCAATCCCATCTTCTTCTAGTTCAGTGAAGACTACCATTTTTGCCAAGGT AAACAAAGGAGAGGTGCCACCGTCCTTCACATTGAAAGATCAGGATGGAAAGACGGTGTCCCTCTCCAAATTCAAAGGGAAGCCTGTGGTTGTCTACTTT TACCCGGCTGATGAAAGCCCTAGCTGCACGAAACAGGCTTGTGCTTTCAGGGATTCTTATGAGAAGTTCAAGAAAGCAGGGGCTGAGGTTGTTGGAATTA GTGGTGATGATCCATCATCGCACAAGGCATTCGCCAAAAACAACAGACTTCCATTTACATTGCTGAGCGACGAAGGCAACAAGATAAGGAAAGAGTGGGG AGTGCCAGCAGACCTGTTCGGAGCATTACCTGGGAGACAGACATATGTTCTAGACAAGAACGGGATGGTCCAGCTGATCTACAACAATCAGTTCCAACCT GAAAAGCATATTGATGAAACCCTGAAACTACTTCAAAGCCTTTGA
AA sequence Show only first row Show all	>Potri.018G063300.1 pacid=42801017 polypeptide=Potri.018G063300.1.p locus=Potri.018G063300 ID=Potri.018G063300.1.v4.1 annot-version=v4.1 MVSISLPNHSLPSLLPTHKPKNLSSQNLPILSKSSRSQFYGLKFSHSSSLSIPSSSSSVKTTIFAKVNKGEVPPSFTLKDQDGKTVSLSKFKGKPVVVYF YPADESPSCTKQACAFRDSYEKFKKAGAEVVGISGDDPSSHKAFAKNNRLPFTLLSDEGNKIRKEWGVPADLFGALPGRQTYVLDKNGMVQLIYNNQFQP EKHIDETLKLLQSL

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G26060		ATPRXQ ,ATPRX Q	peroxiredoxin Q, Thioredoxin s...		Potri.018G063300 [exp]	0	1	Pt-PRXQ.2,PtrcPrx_Q.2
AT2G36250		ATFTSZ2-1, FTSZ...	Tubulin/FtsZ family protein (....		Potri.009G164100 [exp]	7.93	0.9236	Pt-FTSZ2.2
AT1G33540		SCPL18	serine carboxypeptidase-like 1...		Potri.001G291300 [exp]	9.79	0.9377
AT5G59320		LTP3	lipid transfer protein 3 (.1)		Potri.016G135500 [exp]	13.92	0.9343
AT2G33260			Tryptophan/tyrosine permease (...		Potri.019G031800 [exp]	14.73	0.9249
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Potri.015G065600 [exp]	14.83	0.9334
AT1G33540		SCPL18	serine carboxypeptidase-like 1...		Potri.001G312800 [exp]	18.33	0.9338
AT1G07250		UGT71C4	UDP-glucosyl transferase 71C4 ...		Potri.016G014500 [exp]	25.21	0.9259
AT4G05180		PSII-Q, PSBQ, P...	photosystem II subunit Q-2 (.1...		Potri.011G031300 [exp]	28.98	0.9210	Pt-PSBQ2.2
AT1G45688			unknown protein		Potri.003G052900 [exp]	32.01	0.8712
AT1G09850		XBCP3	xylem bark cysteine peptidase ...		Potri.011G066900 [exp]	34.20	0.9111

Compare expression of checked genes

Potri.018G063300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.