Plant FIBer expression Database

TIF3.1 (Potri.018G063600) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol TIF3.1
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G33250 371 / 5e-132 ATTIF3K1, EIF3K eukaryotic translation initiation factor 3K (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G136500
[exp]
435 / 5e-157 AT4G33250 382 / 2e-136 eukaryotic translation initiation factor 3K (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10039931
[exp]
400 / 4e-143 AT4G33250 367 / 2e-130 eukaryotic translation initiation factor 3K (.1)
Lus10027668
[exp]
399 / 8e-143 AT4G33250 363 / 4e-129 eukaryotic translation initiation factor 3K (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0123 HTH PF10075 CSN8_PSD8_EIF3K CSN8/PSMD8/EIF3K family
Representative CDS sequence
>Potri.018G063600.2 pacid=42800808 polypeptide=Potri.018G063600.2.p locus=Potri.018G063600 ID=Potri.018G063600.2.v4.1 annot-version=v4.1
ATGGGTAGGGAAAGAGAGGCTCCTCAGAAACCTCAACAACAACAAGAAGAAGTAGTCTCATACACAGTGGAGCAGCTGGTTGCCGTCAATCCCTACAATC
CTGACATCCTCCCCGATCTCGAAAACTACGTTAACGAACAGGTTTCTTCGCTAACATACAGTCTGGATGCAAATCTTTGCCTTCTTCGCCTCTATCAGTT
CGAGCCAGAGAGAATGAGCACCCAGATTGTGGCTCGTATTCTCATTAAGGCACTCATGGCAATGCCAGCTCCTGATTTTGGCCTTTGTCTCTTTTTGATT
CCAGAACGAGTGCAAATGGAGGAACAGTTCAAGACACTGATTGTTCTCTCACATTATTTGGAGACAGGAAGGTTCCGTCAATTCTGGGATGAAGCTGCAA
AGAATCGCCACATAGTTGAAGCCGTCCCAGGTTTTGAGCAAGCAATCCAAACCTATGCAATTCACCTACTTTCTTTGACTTATCAAAAGGTTCCTAGGTC
TATCCTGGCTGAGGCTATCAACATTGAAGGTCTATCCTTGGACAAGTTCCTGGAACAACAGGTGTCCAATTGTGGTTGGACATTAGAGAAGGGTCATGGG
CAGGTACAGCTCATTGTCCTACCCAGTAATGAATTTAACCATCCTGAGCTAAAGAAGAACACTGCAGATAGCATTCCTTTAGAGCATGTTACCCGCATCT
TCCCCATTCTTGGTTGA
AA sequence
>Potri.018G063600.2 pacid=42800808 polypeptide=Potri.018G063600.2.p locus=Potri.018G063600 ID=Potri.018G063600.2.v4.1 annot-version=v4.1
MGREREAPQKPQQQQEEVVSYTVEQLVAVNPYNPDILPDLENYVNEQVSSLTYSLDANLCLLRLYQFEPERMSTQIVARILIKALMAMPAPDFGLCLFLI
PERVQMEEQFKTLIVLSHYLETGRFRQFWDEAAKNRHIVEAVPGFEQAIQTYAIHLLSLTYQKVPRSILAEAINIEGLSLDKFLEQQVSNCGWTLEKGHG
QVQLIVLPSNEFNHPELKKNTADSIPLEHVTRIFPILG

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G33250 ATTIF3K1, EIF3K eukaryotic translation initiat... Potri.018G063600
[exp]
0 1 TIF3.1
AT4G33865 Ribosomal protein S14p/S29e fa... Potri.002G119600
[exp]
2.44 0.9289
AT2G05840 PAA2 20S proteasome subunit PAA2 (.... Potri.006G140400
[exp]
5.29 0.8996
AT2G39960 Microsomal signal peptidase 25... Potri.010G192700
[exp]
6.92 0.9110
AT3G26400 EIF4B1 eukaryotic translation initiat... Potri.002G198700
[exp]
11.48 0.8945
AT2G27710 60S acidic ribosomal protein f... Potri.004G185800
[exp]
14.00 0.9112
AT2G20820 unknown protein Potri.013G146000
[exp]
17.23 0.8978
AT1G15120 Ubiquinol-cytochrome C reducta... Potri.005G190901
[exp]
17.32 0.9069
AT4G29480 Mitochondrial ATP synthase sub... Potri.006G232000
[exp]
18.65 0.8936
AT1G16000 unknown protein Potri.003G183501
[exp]
19.79 0.8821
AT5G63220 unknown protein Potri.008G044100
[exp]
21.81 0.8608

Potri.018G063600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.