Plant FIBer expression Database

Potri.018G064100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G26460 705 / 0 SMU2 SUPPRESSORS OF MEC-8 AND UNC-52 2, RED family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10039918
[exp]
749 / 0 AT2G26460 745 / 0.0 SUPPRESSORS OF MEC-8 AND UNC-52 2, RED family protein (.1)
Lus10027665
[exp]
715 / 0 AT2G26460 709 / 0.0 SUPPRESSORS OF MEC-8 AND UNC-52 2, RED family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF07807 RED_C RED-like protein C-terminal region
PF07808 RED_N RED-like protein N-terminal region
Representative CDS sequence
>Potri.018G064100.1 pacid=42800969 polypeptide=Potri.018G064100.1.p locus=Potri.018G064100 ID=Potri.018G064100.1.v4.1 annot-version=v4.1
ATGACCTCTTCGAAAAAGCACTACAAGGAGAAAATTGCACGTCGCAAAGAGGAGAAGCCAGAGGAATCAGAAACACCGAAATATAGGGACCGAGCTAAGG
AGAGAAGAGAAGATCAGAATCCTGATTATGAACCGACTGAATTAGGGTCATTTCACGCGGTTGCTCCACCGGGGACTGTTGATATCCGGTCAGTAGCTGA
TTCAAATCAGATTTCTATCGAAAAGAGCAAATACCTTGGAGGTGATGTGGAGCATACGCATTTGGTGAAAGGACTCGATTATGCTTTGCTTAATAAGGTG
AGAAGTGAGATCGATAAGAAGCCGGATTCTGCAGAGGATGTTGATGGGAAGTCTAGAGCATCCAAGGAAGACCAAAAAATATTGTTTCGCACTGCAACTG
CGAAGTCAGTCTACCAATGGATAGTCAAACCTCAAACCATTATCAAGACAAATGAGATGTTTCTTCCTGGTCGAATGTCATTTATTTTTAACATGGAGGG
TGGATACTCTCACGATATTCCAACCACATTGCACAGAAGCAAAGCTGATTGTCCAGTGCCAGAGGAAATGGTTACCGTCAGTGTCGATGGATCTGTGCTT
GATCGAATTGCTAAAATTATGTCATATCTTCGCCTTGGATCTTCTGGGAAGGTTCTCAAGAAGAAAAAGAAGGATAAAGACGCAAAAGGAAAGATTTCAG
TTGTTGGCAATGAATATGATGAGCATGATAAGCCTTCAAAACCTAGTGGTGGCATGTTGAACAATAAAACTGAAAGGGAGATTTTGCCACCACCTCCACC
GCCTCCAAAAAACAATCTGGCTGATTCCTTTGAGAAGCAGCAACCTGCTGTTGCTAGGGAAGACGAGAATGACATATTTGTTGGGCATGGCATTGACTAT
GAAGTTCCTGGAAAAGACATGAGCCAAAGCCCTCTTTCAGAGGACATGGAAGAATCTCCTCGAAACAAGGAAAGATTATCCTATTTCAGTGAACCAGTTT
ATGGTCCAGTGCCTCCCTCTGAGCTATCTCATGAATGGCAAGACCCGAATGGATATGATGCTGTCCATGCTCAAGCATTATCTGCTGACTACCAAGGAGA
GTGGCAGAACTATCAATATGCTGAGCAATTCGCATATCCTGAACAGTACACCCAGCAAACAATGCAGGCTTATGACATGCAAGCTGCTTCTAGTATTCAA
CCAGATCCACGCTTCATGACCCAGGAAGAGAAGGATCGGGGTTTAGGTTCTGTGTTTAAGCGGGATGATCAGAGGCTTCAACAGCTGAGGGAGAAAGATG
CCAGAGAAAAAGATCCCAACTTCATTTCTGATAGTTATTCTGAATGTTATCCTGCATATCAACATTTTACTCGTGAGGTTGTTGATAGTGATGATGAAGA
TGACTTGTCAAAAATGGACATGGGTGGTCGGGCAAAAGGTCGACTTCATCGATGGGACTTTGATACAGAAGACGAGTGGGCAAAATACAATGAGCAGAAG
GAAGCAATGCCAAAGGCTGCATTCCAGTTTGGTGTCAAGATGCAAGATGGTCGGAAGACGAGAAAGCAGAACAAGGACCAGAAGCTTAATAATGAGTTGC
ACCAGATAAATAAGATACTGGCTAAAAAGAAAATAGACAAGGAGAATGGTGACGGCGGCCATTATGATGATGACACACCACCTGGGAAGAAGCAACGACA
ATGA
AA sequence
>Potri.018G064100.1 pacid=42800969 polypeptide=Potri.018G064100.1.p locus=Potri.018G064100 ID=Potri.018G064100.1.v4.1 annot-version=v4.1
MTSSKKHYKEKIARRKEEKPEESETPKYRDRAKERREDQNPDYEPTELGSFHAVAPPGTVDIRSVADSNQISIEKSKYLGGDVEHTHLVKGLDYALLNKV
RSEIDKKPDSAEDVDGKSRASKEDQKILFRTATAKSVYQWIVKPQTIIKTNEMFLPGRMSFIFNMEGGYSHDIPTTLHRSKADCPVPEEMVTVSVDGSVL
DRIAKIMSYLRLGSSGKVLKKKKKDKDAKGKISVVGNEYDEHDKPSKPSGGMLNNKTEREILPPPPPPPKNNLADSFEKQQPAVAREDENDIFVGHGIDY
EVPGKDMSQSPLSEDMEESPRNKERLSYFSEPVYGPVPPSELSHEWQDPNGYDAVHAQALSADYQGEWQNYQYAEQFAYPEQYTQQTMQAYDMQAASSIQ
PDPRFMTQEEKDRGLGSVFKRDDQRLQQLREKDAREKDPNFISDSYSECYPAYQHFTREVVDSDDEDDLSKMDMGGRAKGRLHRWDFDTEDEWAKYNEQK
EAMPKAAFQFGVKMQDGRKTRKQNKDQKLNNELHQINKILAKKKIDKENGDGGHYDDDTPPGKKQRQ

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G26460 SMU2 SUPPRESSORS OF MEC-8 AND UNC-5... Potri.018G064100
[exp]
0 1
AT3G20650 mRNA capping enzyme family pro... Potri.011G130100
[exp]
1.73 0.8369
AT3G09850 D111/G-patch domain-containing... Potri.018G113600
[exp]
3.16 0.8381
AT1G06290 ATACX3, ACX3 acyl-CoA oxidase 3 (.1) Potri.013G123500
[exp]
4.89 0.8126
AT4G24500 hydroxyproline-rich glycoprote... Potri.002G111500
[exp]
5.65 0.8324
AT2G41500 EMB2776, LIS LACHESIS, WD-40 repeat family ... Potri.006G045800
[exp]
7.21 0.8387
AT5G62090 SLK2 SEUSS-like 2 (.1.2) Potri.012G136100
[exp]
12.12 0.8224
AT4G24690 AtNBR1 Arabidopsis thaliana next to B... Potri.015G084000
[exp]
14.69 0.8254
AT5G38640 NagB/RpiA/CoA transferase-like... Potri.012G059300
[exp]
16.12 0.8304
Potri.001G078409
[exp]
16.15 0.8197
AT5G15870 glycosyl hydrolase family 81 p... Potri.004G105300
[exp]
16.73 0.8106

Potri.018G064100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.