Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G43230 649 / 0 RING/FYVE/PHD-type zinc finger family protein (.1) AT1G29800 382 / 1e-128 RING/FYVE/PHD-type zinc finger family protein (.1.2) AT1G20110 64 / 1e-10 RING/FYVE/PHD zinc finger superfamily protein (.1) AT4G33240 63 / 4e-10 FAB1A FORMS APLOID AND BINUCLEATE CELLS 1A, 1-phosphatidylinositol-4-phosphate 5-kinases;zinc ion binding;1-phosphatidylinositol-3-phosphate 5-kinases (.1.2.3) AT3G14270 57 / 2e-08 FAB1B FORMS APLOID AND BINUCLEATE CELLS 1B, phosphatidylinositol-4-phosphate 5-kinase family protein (.1) AT1G61690 57 / 3e-08 phosphoinositide binding (.1) AT1G69710 54 / 2e-07 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT3G47660 50 / 2e-06 Regulator of chromosome condensation (RCC1) family protein (.1) AT5G12350 50 / 2e-06 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT4G14368 50 / 4e-06 Regulator of chromosome condensation (RCC1) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G135800 [exp] 747 / 0 AT3G43230 649 / 0.0 RING/FYVE/PHD-type zinc finger family protein (.1) Potri.004G062500 [exp] 397 / 5e-134 AT1G29800 729 / 0.0 RING/FYVE/PHD-type zinc finger family protein (.1.2) Potri.011G071900 [exp] 391 / 8e-132 AT1G29800 744 / 0.0 RING/FYVE/PHD-type zinc finger family protein (.1.2) Potri.011G106700 [exp] 382 / 2e-128 AT1G29800 703 / 0.0 RING/FYVE/PHD-type zinc finger family protein (.1.2) Potri.003G072300 [exp] 63 / 3e-10 AT3G14270 2157 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1B, phosphatidylinositol-4-phosphate 5-kinase family protein (.1) Potri.005G242700 [exp] 62 / 5e-10 AT1G20110 555 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.002G018900 [exp] 62 / 6e-10 AT1G20110 566 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.001G163200 [exp] 60 / 3e-09 AT3G14270 2134 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1B, phosphatidylinositol-4-phosphate 5-kinase family protein (.1) Potri.011G032200 [exp] 58 / 9e-09 AT1G61690 773 / 0.0 phosphoinositide binding (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027659 [exp] 678 / 0 AT3G43230 654 / 0.0 RING/FYVE/PHD-type zinc finger family protein (.1) Lus10039922 [exp] 669 / 0 AT3G43230 661 / 0.0 RING/FYVE/PHD-type zinc finger family protein (.1) Lus10007320 [exp] 356 / 5e-118 AT1G29800 709 / 0.0 RING/FYVE/PHD-type zinc finger family protein (.1.2) Lus10029271 [exp] 354 / 2e-117 AT1G29800 713 / 0.0 RING/FYVE/PHD-type zinc finger family protein (.1.2) Lus10017277 [exp] 64 / 2e-10 AT1G20110 654 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10013571 [exp] 64 / 2e-10 AT1G20110 650 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10038129 [exp] 61 / 2e-09 AT3G14270 1144 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1B, phosphatidylinositol-4-phosphate 5-kinase family protein (.1) Lus10038127 [exp] 61 / 2e-09 AT4G33240 1429 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1A, 1-phosphatidylinositol-4-phosphate 5-kinases;zinc ion binding;1-phosphatidylinositol-3-phosphate 5-kinases (.1.2.3) Lus10005173 [exp] 60 / 4e-09 AT4G33240 1063 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1A, 1-phosphatidylinositol-4-phosphate 5-kinases;zinc ion binding;1-phosphatidylinositol-3-phosphate 5-kinases (.1.2.3) Lus10018391 [exp] 60 / 4e-09 AT1G61690 838 / 0.0 phosphoinositide binding (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0390 [poplar] [flax] zf-FYVE-PHD PF01363 [poplar] [flax] FYVE FYVE zinc finger CL0390 [poplar] [flax] PF04366 [poplar] [flax] Ysc84 Las17-binding protein actin regulator
Representative CDS sequence Show only first row Show all	>Potri.018G064200.1 pacid=42801528 polypeptide=Potri.018G064200.1.p locus=Potri.018G064200 ID=Potri.018G064200.1.v4.1 annot-version=v4.1 ATGGAGAGTCTTGAAGGAAAAGTACAATTTACATCCCTTTCGAAAGAGAAGAATACGTACCTCAATGTTAATGAGGACTGTAACGATCCCTTTTTATGGC CTGTGCCCAAGGGTGTGAACAACAACAACAACAATAATCAGATAGTTGCTAAATCCTCCTCGATTGGAGATTATGTCGCTTTCGAGTTTCCCCAAGATTA CATTGGTGATTCTAGTTATGATAGTTGTGCTTCCGCCAACTTCAATGCTCCTCCGGAGGTGGAGGTCAACTTGAAAAACGTGTTTGGTGGGATCGTTGCG ATTTTAACTGGGCGGAATAAAGACTCTAGTAGCAGTAGTGTTTCTGTAAATAAACAGCAGCCCGGTTCAGATGTTTCGTTTCTGGGCTCGGAGAAGAATG GGGACACATATTTGCACTCTTCGGTTTATATTCCGAGTGCGCCGCCCGAGCCGAATGGGTTCAATTATGCTGTGTATAAAGCGGTGTTGGAAGCTGAACC ACCTGAGTGGTTGCCGGATAGTTCTACTACAGTTTGTATGCAGTGTACTTCTCCCTTTACAGTGGTTACTCGTGGAAGGCATCATTGTCGTTTTTGTGGT GGAGTTTTTTGCAGAACATGTACTAAAGGACGGTGTTTGTTACCGGCTAAGTTTAGGGAGAGGAACCCCCAGAGGGTTTGTGATGCCTGCTATGACAGGC TCGATCCTTTACAAGGAGTTCTTATTTGTACCATTAGCAATGCTATGCAAGTGGCGAAACATGATGTAATGGATTGGACATGCATGAGAGGATGGTTGAA CCTGCCAGTTGGTTTGTCAATGGAACATGAGATATATAAAGCATCCAATACATTGAGAAGCTATTGGCAGGTATCTACGCTGAATCCTGAGAAGTCCATA CCCCTAGCAGTTATGAAAGGAGCCAAAGGCTTGGCAATCTTAACAGTTGTCAAAGCTGGTGCAGTAGTTGCTTACAAATTTGGAACTGGTTTAGTCATTG CTCGGAGATCAGATGGATCATGGTCTGCCCCTTCAGCAATATGCTCAATTGGTTTAGGATGGGGCGCTCAGATTGGAGGTGAGCTAATGGACTACATAAT TGTGCTCCATGATTTCAAAGCCGTGAAAACGTTTTGTAGTCGCATGCATTTTTCTCTTGGAGCTGGTTGCAGTGCTGCAGCAGGCCCTGTTGGGAGGGTG CTGGAAGCAGATCTTCGTGCTGGGGATAGAGGAGCTGGCATGTGCTATACTTATAGCTGTAGCAAAGGGGCATTTGTGGGAGTGTCGCTAGAAGGAAACA TTGTAGCAACGAGGATGGATACCAATCTAAAGTTTTATGGTGATCCTTATCTCACAACTGCTGACATTCTTCTTGGGACTGTGGATAGACCTAAAGCTGC AGAACCCCTATACGCTGCTCTCAGAGAACTGTACTCAAGTCTACTGCATTAG
AA sequence Show only first row Show all	>Potri.018G064200.1 pacid=42801528 polypeptide=Potri.018G064200.1.p locus=Potri.018G064200 ID=Potri.018G064200.1.v4.1 annot-version=v4.1 MESLEGKVQFTSLSKEKNTYLNVNEDCNDPFLWPVPKGVNNNNNNNQIVAKSSSIGDYVAFEFPQDYIGDSSYDSCASANFNAPPEVEVNLKNVFGGIVA ILTGRNKDSSSSSVSVNKQQPGSDVSFLGSEKNGDTYLHSSVYIPSAPPEPNGFNYAVYKAVLEAEPPEWLPDSSTTVCMQCTSPFTVVTRGRHHCRFCG GVFCRTCTKGRCLLPAKFRERNPQRVCDACYDRLDPLQGVLICTISNAMQVAKHDVMDWTCMRGWLNLPVGLSMEHEIYKASNTLRSYWQVSTLNPEKSI PLAVMKGAKGLAILTVVKAGAVVAYKFGTGLVIARRSDGSWSAPSAICSIGLGWGAQIGGELMDYIIVLHDFKAVKTFCSRMHFSLGAGCSAAAGPVGRV LEADLRAGDRGAGMCYTYSCSKGAFVGVSLEGNIVATRMDTNLKFYGDPYLTTADILLGTVDRPKAAEPLYAALRELYSSLLH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G43230			RING/FYVE/PHD-type zinc finger...		Potri.018G064200 [exp]	0	1
AT3G62770		ATATG18A	autophagy 18a, Transducin/WD40...		Potri.002G207865 [exp]	1.00	0.9390
AT5G49950			alpha/beta-Hydrolases superfam...		Potri.004G223100 [exp]	3.60	0.8187
AT4G18880	HSF	AT-HSFA4A ,HSF ...	ARABIDOPSIS THALIANA HEAT SHOC...		Potri.004G062300 [exp]	3.87	0.8512
AT4G26620			Sucrase/ferredoxin-like family...		Potri.001G369300 [exp]	4.47	0.8211
AT1G53190			RING/U-box superfamily protein...		Potri.011G097100 [exp]	6.00	0.8243
AT5G10030	bZIP	OBF4, TGA4	OCS ELEMENT BINDING FACTOR 4, ...		Potri.007G079900 [exp]	6.48	0.8691	STGA1.2
AT2G31130			unknown protein		Potri.013G118000 [exp]	7.21	0.8489
AT4G02730		AtWDR5b	human WDR5 \(WD40 repeat\) hom...		Potri.002G051900 [exp]	7.34	0.7965	HMCA902
AT5G07610			F-box family protein (.1)		Potri.013G067800 [exp]	7.41	0.8473
AT3G59910			Ankyrin repeat family protein ...		Potri.007G146500 [exp]	7.48	0.8362

Compare expression of checked genes

Potri.018G064200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.