Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53690 273 / 2e-89 RING/U-box superfamily protein (.1) AT3G14250 216 / 1e-67 RING/U-box superfamily protein (.1) AT4G19670 153 / 3e-41 RING/U-box superfamily protein (.1.2) AT5G37560 141 / 2e-37 RING/U-box superfamily protein (.1) AT3G45470 133 / 1e-36 IBR domain containing protein (.1) AT5G60250 135 / 2e-34 zinc finger (C3HC4-type RING finger) family protein (.1) AT2G25360 129 / 2e-33 RING/U-box superfamily protein (.1) AT2G26135 126 / 1e-32 RING/U-box protein with C6HC-type zinc finger (.1) AT2G25370 128 / 3e-32 RING/U-box superfamily protein (.1.2) AT2G21420 126 / 7e-32 IBR domain containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G037200 [exp] 229 / 2e-72 AT3G14250 240 / 3e-78 RING/U-box superfamily protein (.1) Potri.003G187700 [exp] 219 / 1e-68 AT3G14250 242 / 8e-79 RING/U-box superfamily protein (.1) Potri.006G123500 [exp] 171 / 1e-50 AT3G53690 163 / 1e-48 RING/U-box superfamily protein (.1) Potri.013G120300 [exp] 169 / 6e-50 AT3G53690 158 / 7e-47 RING/U-box superfamily protein (.1) Potri.019G093600 [exp] 164 / 3e-48 AT3G53690 158 / 7e-47 RING/U-box superfamily protein (.1) Potri.015G117600 [exp] 139 / 1e-36 AT4G19670 661 / 0.0 RING/U-box superfamily protein (.1.2) Potri.012G119000 [exp] 139 / 3e-36 AT4G19670 622 / 0.0 RING/U-box superfamily protein (.1.2) Potri.006G104700 [exp] 135 / 8e-35 AT5G60250 424 / 4e-141 zinc finger (C3HC4-type RING finger) family protein (.1) Potri.009G150100 [exp] 127 / 3e-32 AT5G60250 378 / 6e-124 zinc finger (C3HC4-type RING finger) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000412 [exp] 210 / 2e-64 AT3G14250 228 / 9e-73 RING/U-box superfamily protein (.1) Lus10026104 [exp] 209 / 3e-64 AT3G14250 240 / 1e-77 RING/U-box superfamily protein (.1) Lus10022063 [exp] 189 / 1e-57 AT3G53690 175 / 3e-53 RING/U-box superfamily protein (.1) Lus10024093 [exp] 186 / 4e-56 AT3G14250 209 / 2e-66 RING/U-box superfamily protein (.1) Lus10038341 [exp] 149 / 1e-39 AT4G19670 607 / 0.0 RING/U-box superfamily protein (.1.2) Lus10036202 [exp] 145 / 2e-38 AT4G19670 624 / 0.0 RING/U-box superfamily protein (.1.2) Lus10036128 [exp] 132 / 9e-34 AT5G60250 410 / 1e-136 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10036127 [exp] 114 / 2e-27 AT5G60250 338 / 9e-108 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10022064 [exp] 84 / 1e-19 AT3G14250 78 / 2e-18 RING/U-box superfamily protein (.1) Lus10042610 [exp] 122 / 6e-17 AT3G53690 113 / 9e-17 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF01485 [poplar] [flax] IBR IBR domain, a half RING-finger domain
Representative CDS sequence Show only first row Show all	>Potri.018G064400.1 pacid=42802026 polypeptide=Potri.018G064400.1.p locus=Potri.018G064400 ID=Potri.018G064400.1.v4.1 annot-version=v4.1 ATGAAGCCAAAAGTTTTGGAAATACCAGAGTCGAAGCCAAAAGTGGAGATGCCCCATATTGTAATCGTGGATGATCATTATCACGACCAGTTTCTTTCCA CACCCTTATCAAACAAAGGCACCACAGAGGACGATGCAATCTCTGTTGAACAGTACAGTGAAGATCGTGACCTTAATGTTGCCGTCATGTCTTCTCTCAA TTCCAGCAAAGAAGCAAACTTTTCGGGGTCCAAACCAGAGGTGGTTCAGATTGTAAACCTTGATTATTATCATGATAGGTTTCTTGGCATGCCCGTATCA AACAAAGGCACCGGAGAGAATAATGCGATCTCTGTTGAAGAGTACGGTGAAGATAGAGACCTCAATATTGCTATCATGGCTTCTCTCAAGTCCAATAAAG AAGCAAACTTTATTGATCCCTCTCAAGATTATTTCTACTACTATAATGATGAGGATGATGATATAAAGGTACTCGATTTCTTGCCTGAAGTCATTCCTTC TAGGAAACAAAAAGAACCCACTTTTATAGAATCAGTGGCTGAAAAGGGTCAATCTTCAAATTCTCAAATTGACCCAGATTTTGTTTGTCAAATCTGTGTC GAACCCACGATTTTAAAGAATTCATTTTTAATCAAGGGTTGCACTCATGCTTACTGTACCGAATGCATGGTCAAGTATGTGTCCTCGAAATTACAGGAAA ACATAACCAAAATCTGCTGTCCTGTTCCAGATTGTAAAGGCGCATTAGAGCCTGAGGATTGCCGTTCAGTTTTACCTGAAAATGTGTTTGATAGGTGGGG TAATGCTCTGTGTGAGGCTGTGATTCTTGGCTCTCAAAAGTTTTATTGTCCTTTTAAAGATTGTTCTGCAATGTTGATTGATGATGGAGAGGAGGTTGTC AGGGAATCTGAATGCCCTAATTGTTGGAGAATGTTCTGTGCACAATGTAAGGTTCCTTGGCATTCACAGATTAGCTGCGAAGAGTATAAAATGCTGCACA AGGATGAAAGAGAGAGGGATGATATACTGTTGATGAATCTAGCAAAGAACAAGAACTGGAGGAGGTGCCCAAAATGCAGGATATTTGTCGAGAAGATAGA AGGTTGTAGATATATGAAATGCAGGTGTGGAACTCAATTCTGTTACAGCTGCGGATCTACTGATTTAAATCCAGTAACACATTACTGTTATAAATGTAAG GGAATTTGGTAG
AA sequence Show only first row Show all	>Potri.018G064400.1 pacid=42802026 polypeptide=Potri.018G064400.1.p locus=Potri.018G064400 ID=Potri.018G064400.1.v4.1 annot-version=v4.1 MKPKVLEIPESKPKVEMPHIVIVDDHYHDQFLSTPLSNKGTTEDDAISVEQYSEDRDLNVAVMSSLNSSKEANFSGSKPEVVQIVNLDYYHDRFLGMPVS NKGTGENNAISVEEYGEDRDLNIAIMASLKSNKEANFIDPSQDYFYYYNDEDDDIKVLDFLPEVIPSRKQKEPTFIESVAEKGQSSNSQIDPDFVCQICV EPTILKNSFLIKGCTHAYCTECMVKYVSSKLQENITKICCPVPDCKGALEPEDCRSVLPENVFDRWGNALCEAVILGSQKFYCPFKDCSAMLIDDGEEVV RESECPNCWRMFCAQCKVPWHSQISCEEYKMLHKDERERDDILLMNLAKNKNWRRCPKCRIFVEKIEGCRYMKCRCGTQFCYSCGSTDLNPVTHYCYKCK GIW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G53690			RING/U-box superfamily protein...		Potri.018G064400 [exp]	0	1
AT5G37020	ARF	ARF8, ATARF8	auxin response factor 8 (.1.2)		Potri.005G207700 [exp]	1.00	0.8689
AT3G15355		UBC25 ,PFU1	PHO2 FAMILY UBIQUITIN CONJUGAT...		Potri.001G400300 [exp]	3.74	0.8346
AT3G48470		EMB2423	embryo defective 2423 (.1)		Potri.015G090700 [exp]	6.48	0.8269
AT5G09860		AtTHO1, AtHPR1	nuclear matrix protein-related...		Potri.001G031700 [exp]	7.74	0.7954
					Potri.003G012451 [exp]	11.83	0.8128
AT1G25500			Plasma-membrane choline transp...		Potri.010G128100 [exp]	12.44	0.7589
AT3G20480		AtLpxK	lipid X K, tetraacyldisacchari...		Potri.001G418800 [exp]	12.72	0.7912
AT5G65550			UDP-Glycosyltransferase superf...		Potri.008G024900 [exp]	13.26	0.7791
AT3G23780		NRPE2, DMS2, DR...	DEFECTIVE IN MERISTEM SILENCIN...		Potri.018G019100 [exp]	14.07	0.7679
AT1G24625	C2H2ZnF	ZFP7	zinc finger protein 7 (.1)		Potri.001G298700 [exp]	15.16	0.7497

Compare expression of checked genes

Potri.018G064400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.