Plant FIBer expression Database

Potri.018G064500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G43240 1030 / 0 ARID ARID/BRIGHT DNA-binding domain-containing protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G135500
[exp]
1363 / 0 AT3G43240 1017 / 0.0 ARID/BRIGHT DNA-binding domain-containing protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10039924
[exp]
1200 / 0 AT3G43240 1006 / 0.0 ARID/BRIGHT DNA-binding domain-containing protein (.1)
Lus10027658
[exp]
1175 / 0 AT3G43240 1001 / 0.0 ARID/BRIGHT DNA-binding domain-containing protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0123 HTH PF01388 ARID ARID/BRIGHT DNA binding domain
Representative CDS sequence
>Potri.018G064500.1 pacid=42800401 polypeptide=Potri.018G064500.1.p locus=Potri.018G064500 ID=Potri.018G064500.1.v4.1 annot-version=v4.1
ATGATGTTTCATGCTCAAGGTCCTTTAAGGAATCATTGTACTCTCCTTGCTGTTCTTTGTGGTAAAAGTGGTGAGCAGAAACTGCCTCTCTCTGATGATA
AACCCAGATACCCTTTACCGGAACTTGAATCTACTGGGCGGCTTGAGGTTCAGGTACTGAATAATCCGAGCACTGATGAGTTTCGGCAAGTGCTGCAGTC
TCTGGAGCCCAGCATTGTGTATTTTCAAGGTGAGCAGGTTGAAGATAGAGAAGAAATTGGATCTCTAAGATGGGCAGATGTTGGTTTGTCCACTCCAGAA
TCCTTATGTGGATTATTTGGTTCCACGTTGCCTCCCACGGTTTATTTAGAGATGCCCAATGGTGAGAAGTTGGCCGAGGCACTTCACTCCAAGGGAGTTC
CATATGTTATATATTGGAAAAGTGCCTTTTCATGTTATGCTGCTTCTCACTTTCGTCAAGCATTGTTGTCAGTGGTTCAAAGTTCTTGCAGCCATACATG
TGATGCATTCCAACTTGCTCATGCATCTTTTAGGCTCTACTGTGTACAGAACAACAATACCCCAGCTTCCAATAGCCAAAAAGTTGGCGGTAAACCCGGA
CCGCGGTTACTTGGGGATCCTCCGAAGTTTGATATTTCTCTCCCTGAGGCAGATGATCAGGGTGAAGAAGGCTCTTCTGGGGCTCTTCCTGCTATAAAAA
TATATGATGATGATGTGACCATGAGGTTTCTTGTTTGTGGACTGACAGGCACATTGGATGCATGTGCGCTGGGATCTTTGGAGGATGGGCTCAATGCTCT
CCTGAACATTGAAATTCGTGGGAGTAAACTTCATAATCGCACAAGTGCTCCTCCTCCCCCTCTTCAGGCAGGGACATTTTCTCGTGGTGTAGTGACAATG
CGATGTGATTTATCAACCTGTAGTTCTGCTCACATATCACTGCTAGTGTCCGGCAGTGCACAAAATTGTTTTAATGATCAGCTTTTAGAGAATCATATTA
AAAGTGAGCTTATCGAGAACAGTCAGCTAGTCCATGCATCGACCAGTTCTGATGAAAGCAAATCACCTTCATCTGAGCCACGAAAGTCTGCATCCATAGC
CTGTGGGGCAAGTGTTTTTGAAGTTTCCATGAAGGTTCCTACTTGGGCATCACAGGTTTTGCGGCAGCTGGCCCCAGATGTAACCTACCGCAGCTTAGTC
ATGCTAGGAATTGCTAGCATTCAAGGACTGTCAGTTGCTTCTTTTGAAAAAGATGATGCTGATCGCCTCCTTTTCTTCTGTACAAAGCAGAGCAAAGATC
CCCATCCACGCAACCCCGTTCTCACTAGGCATCCTAGCTGGTTGATTCCTCCTGCCCCTTGTCGAAAAAGATCTGAGCCTTCCCGAGAAACTAAACCCTT
GACTTTTGGCTGTGGAGGTGAAAATGGAGGAAATTTTAAACAGAAGTTGTATGTTGCTGCAATGAGGCCAATACCTCACACTCGTCGTCATAAAATGCTT
CCATTTTCTGGATTTTTGGAGGCAGAAAGATATGATGGAGAACAAACAAAACCTAGCTTGCCACCTCCACCGAAGCATAGTGTTGTTGGGCCTGCACCTG
TCACGCATCGAAAATCATTGTCAAACTCTTATCAGGCTCAGCAGATTATTTCTCTAAATCCACTGCCTTTGAAGAAACATGGTTGTGGCAGATCTCCAAT
ACAAGCTTGCTCTGAGGAGGAATTCTTGAGGGATGTAATGCAGTTCTTGATTCTTCGTGGTCATTCTCGTCTTGTTCCTCAAGGTGGACTGGCTGAATTT
CCTGATGCCATTCTCAATGCAAAACGCCTCGACCTTTTTAACTTGTATAGAGAGGTGGTTTCAAGAGGAGGTTTTCATGTTGGGAATGGAATCAACTGGA
AAGGACAAGTTTTCTCAAAGATGCGCAATCATACGTTGACTAATAGAATGACTGGTGTTGGCAATACACTGAAAAGGCACTATGAAACTTACCTTTTGGA
ATATGAATTGGCCCATGATGATGTAGATGGAGAATGTTGCTTGTTGTGTCACAGTAGTGCAGCTGGTGATTGGGTTAACTGTGGAATATGTGGCGAGTGG
GCTCACTTCGGCTGTGATAGGAGGCAGGGACTCGGTGCCTTTAAGGACTATGCTAAGACAGACGGGCTGGAGTATATTTGTCCTCACTGCAGCATCGCAA
ATTTCAAGAAAAAATCCCAGAAAAATGCAAATGGATATTAG
AA sequence
>Potri.018G064500.1 pacid=42800401 polypeptide=Potri.018G064500.1.p locus=Potri.018G064500 ID=Potri.018G064500.1.v4.1 annot-version=v4.1
MMFHAQGPLRNHCTLLAVLCGKSGEQKLPLSDDKPRYPLPELESTGRLEVQVLNNPSTDEFRQVLQSLEPSIVYFQGEQVEDREEIGSLRWADVGLSTPE
SLCGLFGSTLPPTVYLEMPNGEKLAEALHSKGVPYVIYWKSAFSCYAASHFRQALLSVVQSSCSHTCDAFQLAHASFRLYCVQNNNTPASNSQKVGGKPG
PRLLGDPPKFDISLPEADDQGEEGSSGALPAIKIYDDDVTMRFLVCGLTGTLDACALGSLEDGLNALLNIEIRGSKLHNRTSAPPPPLQAGTFSRGVVTM
RCDLSTCSSAHISLLVSGSAQNCFNDQLLENHIKSELIENSQLVHASTSSDESKSPSSEPRKSASIACGASVFEVSMKVPTWASQVLRQLAPDVTYRSLV
MLGIASIQGLSVASFEKDDADRLLFFCTKQSKDPHPRNPVLTRHPSWLIPPAPCRKRSEPSRETKPLTFGCGGENGGNFKQKLYVAAMRPIPHTRRHKML
PFSGFLEAERYDGEQTKPSLPPPPKHSVVGPAPVTHRKSLSNSYQAQQIISLNPLPLKKHGCGRSPIQACSEEEFLRDVMQFLILRGHSRLVPQGGLAEF
PDAILNAKRLDLFNLYREVVSRGGFHVGNGINWKGQVFSKMRNHTLTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGICGEW
AHFGCDRRQGLGAFKDYAKTDGLEYICPHCSIANFKKKSQKNANGY

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G43240 ARID ARID/BRIGHT DNA-binding domain... Potri.018G064500
[exp]
0 1
AT4G34310 alpha/beta-Hydrolases superfam... Potri.014G034100
[exp]
2.64 0.8440
AT3G08020 PHD finger family protein (.1) Potri.009G059500
[exp]
8.48 0.8363
AT3G54460 SNF2 domain-containing protein... Potri.003G197701
[exp]
9.48 0.7644
AT2G24640 UBP19 ubiquitin-specific protease 19... Potri.006G270600
[exp]
9.64 0.7428
AT2G37520 Acyl-CoA N-acyltransferase wit... Potri.006G083600
[exp]
10.00 0.7518
AT5G46210 CUL4, ATCUL4 cullin4 (.1) Potri.011G084400
[exp]
10.95 0.7528
AT5G23150 HUA2 ENHANCER OF AG-4 2, Tudor/PWWP... Potri.007G071600
[exp]
12.12 0.8193
AT5G05450 P-loop containing nucleoside t... Potri.010G184132
[exp]
16.24 0.7567
AT5G22750 RAD5A, RAD5 DNA/RNA helicase protein (.1) Potri.004G189400
[exp]
19.28 0.7859
AT3G48050 SUO 'shuttle' in chinese, BAH doma... Potri.012G077500
[exp]
20.88 0.7916

Potri.018G064500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.