Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G72830 172 / 4e-51 CCAAT NF-YA3, ATHAP2C, HAP2C "nuclear factor Y, subunit A3", nuclear factor Y, subunit A3 (.1.2.3) AT1G17590 142 / 1e-39 CCAAT NF-YA8 "nuclear factor Y, subunit A8", nuclear factor Y, subunit A8 (.1.2.3.4) AT3G14020 135 / 5e-37 CCAAT NF-YA6 "nuclear factor Y, subunit A6", nuclear factor Y, subunit A6 (.1) AT1G54160 133 / 2e-36 CCAAT NFYA5, NF-YA5 NUCLEAR FACTOR Y A5, "nuclear factor Y, subunit A5", nuclear factor Y, subunit A5 (.1) AT1G30500 123 / 8e-34 CCAAT NF-YA7 "nuclear factor Y, subunit A7", nuclear factor Y, subunit A7 (.1.2) AT5G12840 120 / 1e-31 CCAAT NF-YA1, ATHAP2A, HAP2A, EMB2220 "nuclear factor Y, subunit A1", EMBRYO DEFECTIVE 2220, nuclear factor Y, subunit A1 (.1.2.3.4) AT3G20910 116 / 5e-30 CCAAT NF-YA9 "nuclear factor Y, subunit A9", nuclear factor Y, subunit A9 (.1) AT2G34720 113 / 6e-30 CCAAT NF-YA4 "nuclear factor Y, subunit A4", nuclear factor Y, subunit A4 (.1) AT5G06510 101 / 1e-24 CCAAT NF-YA10 "nuclear factor Y, subunit A10", nuclear factor Y, subunit A10 (.1.2.3) AT3G05690 97 / 9e-23 CCAAT NF-YA2, ATHAP2B, HAP2B, UNE8 UNFERTILIZED EMBRYO SAC 8, "nuclear factor Y, subunit A2", HEME ACTIVATOR PROTEIN \(YEAST\) HOMOLOG 2B, HEME ACTIVATOR PROTEIN \(YEAST\) HOMOLOG 2B, nuclear factor Y, subunit A2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G145100 [exp] 567 / 0 AT1G72830 168 / 3e-49 "nuclear factor Y, subunit A3", nuclear factor Y, subunit A3 (.1.2.3) Potri.011G098400 [exp] 125 / 2e-34 AT1G30500 171 / 4e-54 "nuclear factor Y, subunit A7", nuclear factor Y, subunit A7 (.1.2) Potri.009G060600 [exp] 126 / 8e-34 AT5G12840 114 / 9e-30 "nuclear factor Y, subunit A1", EMBRYO DEFECTIVE 2220, nuclear factor Y, subunit A1 (.1.2.3.4) Potri.001G266000 [exp] 125 / 2e-33 AT5G12840 103 / 1e-25 "nuclear factor Y, subunit A1", EMBRYO DEFECTIVE 2220, nuclear factor Y, subunit A1 (.1.2.3.4) Potri.001G372100 [exp] 118 / 2e-31 AT1G30500 170 / 1e-53 "nuclear factor Y, subunit A7", nuclear factor Y, subunit A7 (.1.2) Potri.001G257600 [exp] 115 / 2e-29 AT5G12840 216 / 1e-68 "nuclear factor Y, subunit A1", EMBRYO DEFECTIVE 2220, nuclear factor Y, subunit A1 (.1.2.3.4) Potri.006G201900 [exp] 109 / 3e-27 AT5G06510 166 / 3e-49 "nuclear factor Y, subunit A10", nuclear factor Y, subunit A10 (.1.2.3) Potri.009G052900 [exp] 108 / 7e-27 AT5G12840 203 / 1e-63 "nuclear factor Y, subunit A1", EMBRYO DEFECTIVE 2220, nuclear factor Y, subunit A1 (.1.2.3.4) Potri.006G053500 [exp] 107 / 7e-27 AT1G30500 123 / 3e-34 "nuclear factor Y, subunit A7", nuclear factor Y, subunit A7 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023358 [exp] 129 / 4e-36 AT1G30500 192 / 5e-63 "nuclear factor Y, subunit A7", nuclear factor Y, subunit A7 (.1.2) Lus10038448 [exp] 128 / 5e-35 AT1G30500 205 / 1e-66 "nuclear factor Y, subunit A7", nuclear factor Y, subunit A7 (.1.2) Lus10016411 [exp] 128 / 4e-34 AT5G12840 140 / 1e-39 "nuclear factor Y, subunit A1", EMBRYO DEFECTIVE 2220, nuclear factor Y, subunit A1 (.1.2.3.4) Lus10009944 [exp] 119 / 9e-31 AT5G12840 229 / 1e-73 "nuclear factor Y, subunit A1", EMBRYO DEFECTIVE 2220, nuclear factor Y, subunit A1 (.1.2.3.4) Lus10011326 [exp] 112 / 1e-28 AT1G30500 118 / 2e-32 "nuclear factor Y, subunit A7", nuclear factor Y, subunit A7 (.1.2) Lus10019708 [exp] 116 / 2e-28 AT5G17680 495 / 1e-150 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10012202 [exp] 110 / 7e-28 AT1G30500 121 / 7e-34 "nuclear factor Y, subunit A7", nuclear factor Y, subunit A7 (.1.2) Lus10021259 [exp] 108 / 1e-26 AT5G06510 178 / 5e-54 "nuclear factor Y, subunit A10", nuclear factor Y, subunit A10 (.1.2.3) Lus10013592 [exp] 108 / 1e-26 AT5G06510 175 / 1e-52 "nuclear factor Y, subunit A10", nuclear factor Y, subunit A10 (.1.2.3) Lus10030137 [exp] 100 / 6e-24 AT5G12840 170 / 5e-51 "nuclear factor Y, subunit A1", EMBRYO DEFECTIVE 2220, nuclear factor Y, subunit A1 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02045 [poplar] [flax] CBFB_NFYA CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B
Representative CDS sequence Show only first row Show all	>Potri.018G064700.1 pacid=42800662 polypeptide=Potri.018G064700.1.p locus=Potri.018G064700 ID=Potri.018G064700.1.v4.1 annot-version=v4.1 ATGGCTTTACGAATTCAGAACTTGCTGAAGAAAAACTTTGATGAACCTTACTTCACTGTTAGTTGCCCATCATGGTGGAATTCAAATGAACAGCAATTTT TGCCATCTTTATCCAAGAACACAAGCTTTAAAGTAGACTCTCCAAACCAACCTTATCATGAATCAAAGCAGTTAGGATTTCATCTCCTGGACCAGGAATC ATCCTCAACTCTATCAATTGGTCAATCTCACAATGAAATGAGTTCTGTGGGAGGGATCAATTCACAAGATCAGTGTATTTCATCTGAATCTGATGAAAGT TGTGGGAAGGGCGTGAAGGGAAAAATGAAGCCAGTTCTCTTGTTGAGTACTCCAGATAGCGTGTCTAATCACTCACAAGCTGATTGTAGCTATTCAATGG TTCGTGCTCCATATGCTGATCCTTACTTTGGTGGGCTGTGTAATCCATATGAACTTCATGCTTTTATTCAGCCCCATCTGGGTTCTCATATGGTGGGGAT GACAGCTGGACGAGTCCCACTCCCTGTTGATCTTGCAGATGATGGACCAATTTATGTTAATGCTAAACAGTACCGTGGAATTATCAGAAGGAGACAATCA CGGGCAAAGCTTGAGGCTCAAAACAAACTGGTAAAAAATCGAAAGCCATACCTTCACGAGTCTCGGCACATTCATGCCTTGAATAGGGTTCGAGGATCTG GTGGACGCTTTCTCAGCAAAAAAAAGCTCCAGGAATCTGATCCCACTCCTAGTCAGTGTAATGTCACAGATACCATCCACTCACACGTAAAGAATGATGC ATCAGAACTAGAAAGCTATCAGTCTGGAACCGGACAATCTGGTGCCTCAAATACTACCTGCTCTGACATCACCAGTGTCTCCTACAGCAATGTCACTTTT AGGCAGCCAGAACGCCGGTTCTCAGGTATTGCTACTCACCTTGGTGGAGGCATGGAAATCAACAGTAGGCTTATTTGCAGAGGAACCCAACACCACACTT CCGTTGTTCAGTGA
AA sequence Show only first row Show all	>Potri.018G064700.1 pacid=42800662 polypeptide=Potri.018G064700.1.p locus=Potri.018G064700 ID=Potri.018G064700.1.v4.1 annot-version=v4.1 MALRIQNLLKKNFDEPYFTVSCPSWWNSNEQQFLPSLSKNTSFKVDSPNQPYHESKQLGFHLLDQESSSTLSIGQSHNEMSSVGGINSQDQCISSESDES CGKGVKGKMKPVLLLSTPDSVSNHSQADCSYSMVRAPYADPYFGGLCNPYELHAFIQPHLGSHMVGMTAGRVPLPVDLADDGPIYVNAKQYRGIIRRRQS RAKLEAQNKLVKNRKPYLHESRHIHALNRVRGSGGRFLSKKKLQESDPTPSQCNVTDTIHSHVKNDASELESYQSGTGQSGASNTTCSDITSVSYSNVTF RQPERRFSGIATHLGGGMEINSRLICRGTQHHTSVVQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G72830	CCAAT	NF-YA3, ATHAP2C...	"nuclear factor Y, subunit A3"...		Potri.018G064700 [exp]	0	1
AT1G72830	CCAAT	NF-YA3, ATHAP2C...	"nuclear factor Y, subunit A3"...		Potri.006G145100 [exp]	1.00	0.9359	HAP2.6
AT5G06510	CCAAT	NF-YA10	"nuclear factor Y, subunit A10...		Potri.006G201900 [exp]	2.82	0.8697
AT1G50420	GRAS	SCL-3, SCL3	scarecrow-like 3 (.1)		Potri.003G202100 [exp]	5.19	0.8150
AT5G12840	CCAAT	NF-YA1, ATHAP2A...	"nuclear factor Y, subunit A1"...		Potri.009G060600 [exp]	5.65	0.7648
AT1G79740			hAT transposon superfamily (.1...		Potri.018G135702 [exp]	5.74	0.8434
AT2G46410	MYB	CPC	CAPRICE, Homeodomain-like supe...		Potri.014G096300 [exp]	8.06	0.7945	CPC.2,MYB217
AT1G30840		ATPUP4	purine permease 4 (.1.2)		Potri.001G074100 [exp]	8.71	0.7840
AT5G06510	CCAAT	NF-YA10	"nuclear factor Y, subunit A10...		Potri.016G068200 [exp]	9.16	0.8196
AT1G04570			Major facilitator superfamily ...		Potri.008G173600 [exp]	9.38	0.8106
AT4G23980	ARF	ARF9	auxin response factor 9 (.1.2)		Potri.001G088600 [exp]	9.79	0.8376

Compare expression of checked genes

Potri.018G064700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.