Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20520 530 / 0 WAV2 WAVY GROWTH 2, alpha/beta-Hydrolases superfamily protein (.1) AT1G66900 64 / 1e-11 alpha/beta-Hydrolases superfamily protein (.1) AT5G14390 64 / 2e-11 alpha/beta-Hydrolases superfamily protein (.1) AT1G13610 64 / 3e-11 alpha/beta-Hydrolases superfamily protein (.1.2) AT3G01690 60 / 5e-10 alpha/beta-Hydrolases superfamily protein (.1) AT4G31020 57 / 3e-09 alpha/beta-Hydrolases superfamily protein (.1.2) AT3G30380 57 / 4e-09 alpha/beta-Hydrolases superfamily protein (.1.2) AT4G14290 53 / 2e-07 alpha/beta-Hydrolases superfamily protein (.1) AT1G32190 50 / 7e-07 alpha/beta-Hydrolases superfamily protein (.1.2) AT4G14570 49 / 4e-06 AtAARE, AARE acylamino acid-releasing enzyme, acylaminoacyl-peptidase-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G145200 [exp] 606 / 0 AT5G20520 511 / 0.0 WAVY GROWTH 2, alpha/beta-Hydrolases superfamily protein (.1) Potri.010G136900 [exp] 69 / 6e-13 AT3G30380 464 / 3e-164 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.008G112600 [exp] 66 / 5e-12 AT3G30380 458 / 1e-161 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.015G087100 [exp] 65 / 1e-11 AT4G24760 560 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.017G102500 [exp] 64 / 4e-11 AT3G30380 528 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.001G340000 [exp] 63 / 6e-11 AT5G14390 511 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.012G090800 [exp] 62 / 1e-10 AT4G24760 549 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.004G112300 [exp] 59 / 1e-09 AT3G30380 509 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.018G111400 [exp] 57 / 3e-09 AT4G31020 447 / 4e-160 alpha/beta-Hydrolases superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027619 [exp] 498 / 3e-179 AT5G20520 479 / 4e-172 WAVY GROWTH 2, alpha/beta-Hydrolases superfamily protein (.1) Lus10011949 [exp] 465 / 2e-166 AT5G20520 437 / 1e-155 WAVY GROWTH 2, alpha/beta-Hydrolases superfamily protein (.1) Lus10036842 [exp] 67 / 4e-12 AT3G30380 423 / 2e-147 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10042075 [exp] 59 / 1e-09 AT4G24760 523 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10018081 [exp] 59 / 2e-09 AT5G50230 766 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10019604 [exp] 58 / 2e-09 AT4G31020 487 / 9e-176 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10040038 [exp] 58 / 2e-09 AT4G31020 491 / 3e-177 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10035148 [exp] 54 / 9e-08 AT3G30380 579 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10031953 [exp] 53 / 2e-07 AT3G30380 571 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10022307 [exp] 52 / 2e-07 AT5G14390 547 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF12695 [poplar] [flax] Abhydrolase_5 Alpha/beta hydrolase family
Representative CDS sequence Show only first row Show all	>Potri.018G064800.1 pacid=42800738 polypeptide=Potri.018G064800.1.p locus=Potri.018G064800 ID=Potri.018G064800.1.v4.1 annot-version=v4.1 ATGGTGTCGTACGTGAGCGCGTTTCTGTACGGAGTCGGAGGCATAGTAGTAGCAGGGATGGCTTTGCTTGTAGCCTTTCAAGAGAAGCTCGTCTACGTCC CGGTCTTACCCGGTCTCACTAAATCCTACTCGATCACTCCTGCTCGACTCCGTCTCCTTTACGAGGACGTTTGGCTCCGATCCTCCGATGGCGTCCGCCT TCACGCTTGGTTCATTAAGCTCCTCCCTGAATGCAGAGGTCCAACTGTCCTGTTTTTCCAAGAGAATGCTGGAAACATTGCTCATCGTCTTGAAATGGTC CGCATAATGATTCAGAGGTTGCAGTGCAACGTGTTCATGCTTTCATATCGAGGTTATGGAGCAAGTGATGGATATCCTTCGCAGCATGGAATTGCAAAAG ATGCTCAGGCTGCTCTGGATCATCTTTCACAGAGGACTGACATTGACACATCTAGAATAGTCGTGTTTGGGCGGTCACTTGGGGGTGCAGTTGGGGCTCT GCTCACCAAAAACAACCCCGATAAGGTTGCTGCATTGATCTTGGAGAACACTTTTACATCCATTCTAGACATGGCAGGAGTTCTACTGCCCTTCCTAAAG TGGTTTATTGGAGGCACAGGTTCAAAAGGGCCTAAAATTCTTAATTTTCTTGTACGTTCTCCATGGAGTACCATTGACATTGTTGGCCAGATTAATCAGC CAATTCTTTTTCTTTCTGGATTGCAAGATGAAATGGTTCCTCCATCACATATGCAAATGCTCTACGCTAAAGTAGCTTCTCATAATAGGGAATGCATCTT TGTGGAGTTTCCTAATGGCATGCATATGGACACTTGGCTTGCTGGTGGTGATCACTACTGGAGAACTATTCAGCAGTTTATTGGAAACCATGTTCCAGAG ATAAAGGAACATGAATCATCCCACGATGACAAAGTTGCAGCAATTAAAAGCTCTTTGTGA
AA sequence Show only first row Show all	>Potri.018G064800.1 pacid=42800738 polypeptide=Potri.018G064800.1.p locus=Potri.018G064800 ID=Potri.018G064800.1.v4.1 annot-version=v4.1 MVSYVSAFLYGVGGIVVAGMALLVAFQEKLVYVPVLPGLTKSYSITPARLRLLYEDVWLRSSDGVRLHAWFIKLLPECRGPTVLFFQENAGNIAHRLEMV RIMIQRLQCNVFMLSYRGYGASDGYPSQHGIAKDAQAALDHLSQRTDIDTSRIVVFGRSLGGAVGALLTKNNPDKVAALILENTFTSILDMAGVLLPFLK WFIGGTGSKGPKILNFLVRSPWSTIDIVGQINQPILFLSGLQDEMVPPSHMQMLYAKVASHNRECIFVEFPNGMHMDTWLAGGDHYWRTIQQFIGNHVPE IKEHESSHDDKVAAIKSSL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G20520		WAV2	WAVY GROWTH 2, alpha/beta-Hydr...		Potri.018G064800 [exp]	0	1
AT2G31680		AtRABA5d	RAB GTPase homolog A5D (.1)		Potri.002G231800 [exp]	2.82	0.8432
AT2G01470		ATSEC12, STL2P	SEC12P-like 2 protein (.1)		Potri.008G130300 [exp]	4.58	0.8126
AT5G23540			Mov34/MPN/PAD-1 family protein...		Potri.014G032900 [exp]	6.55	0.8436
AT2G43070		ATSPPL3	ARABIDOPSIS THALIANA SIGNAL PE...		Potri.002G232200 [exp]	10.95	0.7510
AT4G33410		ATSPPL1	SIGNAL PEPTIDE PEPTIDASE-LIKE ...		Potri.012G142400 [exp]	12.64	0.8226
AT1G23750			Nucleic acid-binding, OB-fold-...		Potri.008G189900 [exp]	14.49	0.7911
AT5G47570			unknown protein		Potri.001G122200 [exp]	14.79	0.8257
AT3G03070			NADH-ubiquinone oxidoreductase...		Potri.013G082100 [exp]	15.32	0.8161
AT4G34720		ATVHA-C1, AVA-P...	VACUOLAR H+-PUMPING ATPASE C1,...		Potri.004G163400 [exp]	22.71	0.8136	AVAP5.1
AT5G20165			unknown protein		Potri.008G176801 [exp]	22.80	0.7846

Compare expression of checked genes

Potri.018G064800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.