Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20540 426 / 7e-149 ATBRXL4, BRX-LIKE4 BREVIS RADIX-like 4 (.1) AT3G14000 373 / 3e-128 ATBRXL2, BRX-LIKE2 DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein (.1), DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein (.2) AT1G54180 354 / 4e-121 ATBRXL3, BRX-LIKE3 ARABIDOPSIS THALIANA BREVIS RADIX-LIKE 3, BREVIS RADIX-like 3 (.1.2) AT1G31880 227 / 2e-71 BRX, NIP3;1, NLM9 BREVIS RADIX, DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein (.1) AT2G35600 204 / 7e-63 BRXL1, ATBRXL1, BRX-LIKE1 ARABIDOPSIS THALIANA BREVIS RADIX LIKE 1, BREVIS RADIX-like 1 (.1) AT2G21030 113 / 4e-30 unknown protein AT5G12350 81 / 4e-16 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT5G19420 80 / 6e-16 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) AT1G69710 74 / 7e-14 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT1G65920 60 / 1e-09 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G144900 [exp] 632 / 0 AT5G20540 422 / 2e-147 BREVIS RADIX-like 4 (.1) Potri.001G170800 [exp] 423 / 8e-148 AT3G14000 467 / 2e-165 DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein (.1), DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein (.2) Potri.003G063200 [exp] 423 / 1e-147 AT3G14000 492 / 4e-175 DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein (.1), DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein (.2) Potri.001G131800 [exp] 285 / 1e-93 AT1G31880 462 / 4e-164 BREVIS RADIX, DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein (.1) Potri.003G101500 [exp] 283 / 3e-93 AT1G31880 434 / 8e-153 BREVIS RADIX, DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein (.1) Potri.001G026900 [exp] 86 / 1e-17 AT5G19420 1281 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.003G197600 [exp] 82 / 2e-16 AT5G19420 1292 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.T124906 [exp] 81 / 4e-16 AT5G19420 1292 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.009G071800 [exp] 80 / 8e-16 AT5G19420 1610 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017164 [exp] 421 / 3e-147 AT5G20540 457 / 1e-161 BREVIS RADIX-like 4 (.1) Lus10021565 [exp] 409 / 3e-142 AT5G20540 420 / 1e-146 BREVIS RADIX-like 4 (.1) Lus10008459 [exp] 345 / 3e-117 AT3G14000 441 / 1e-155 DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein (.1), DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein (.2) Lus10000884 [exp] 334 / 6e-113 AT3G14000 439 / 3e-154 DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein (.1), DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein (.2) Lus10030349 [exp] 228 / 6e-72 AT1G31880 410 / 5e-144 BREVIS RADIX, DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein (.1) Lus10007898 [exp] 199 / 2e-61 AT1G31880 363 / 1e-126 BREVIS RADIX, DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein (.1) Lus10002751 [exp] 86 / 6e-18 AT5G19420 949 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Lus10036030 [exp] 85 / 2e-17 AT5G19420 1644 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Lus10009701 [exp] 84 / 5e-17 AT5G19420 1567 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Lus10016335 [exp] 83 / 5e-17 AT5G19420 971 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08381 [poplar] [flax] BRX Transcription factor regulating root and shoot growth via Pin3 PF13713 [poplar] [flax] BRX_N Transcription factor BRX N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.018G064900.4 pacid=42800504 polypeptide=Potri.018G064900.4.p locus=Potri.018G064900 ID=Potri.018G064900.4.v4.1 annot-version=v4.1 ATGCTGACCTGTATAGCTCGTTCTAAACAACCTGGTGATGACTCGCTGAGTCAACCCCATGCCGGCTCAGCCACCACCACCAATCATCCCTCCGCTGCCA AACAACACCAAGCCATCAAATCCCTCACTTCTCAGTTAAAGGATATGGCATTAAAGGCATCAGGTGCATACCGCCACTGCAACCCATGCACGGTGCCAAC AACAACAACAACAACTCAGAGTCGACTCAGGAGCAACTGGACTGCATCAGACGCAGAGTCGGAGAGATTCAGGTGGCCGCTGCAGAGGACGGGAAGCTCG AGCTCGATTACACCGCGTACGTGGGGAAAAGAGATGGAGGCGAGGCTGAAAGGTATATCGAGCTCCAGCGGTGAAGGGACCCCGAATTCGGTAAATAGCA GCGGGCGTCGGGTCGACCCGCCGATAGCTTTCGTGGAAGAAAAGGAGCCTAAAGAATGGGTGGCCCAAGTGGAGCCCGGTGTACTCATCACCCTAGTTTC GCTTCCAAGGGGAGGGAATGATCTCAAGCGGATACGCTTCAGTCGAGACATGTTTAACAAGTGGCAAGCTCAAAGATGGTGGGCAGAGAACTACGACAGG ATCATGGAGCTTTACAATGTTCAGAGGTTTAACTGCCAAGCTTTTCCACTCCCGCCACCCCCAAGATCCGAGGATGAGAGCTCAAAGATGGAATCTGCAG AAGACATCCCTGTAACACCACCACTGAATAGAGAGCGGTTACCTCGTAATTTGTATCGTCCAACAGGGACGGGAATGGGCTACTCATCCTCTGATTCACT TGACCATCACCCAATTCAGGCTCGTCATTACTGTGACTCTACTGGTCTCACCTCCACCCCAAAACTCTCTAGCATCAGTGGAGCTAAGACGGAAACATCT TCAATGGATGCATCTATAAGAAGTAGCTCATCGAGGGAGGCTGATTGCTCAGGAGAGCTCTCCATCAGCAATGCCAGTGATATGGAAACTGAATGGGTTG AACAGGATGAACAAGGTGTTTACATCACTATAAGAGCCTTGCCAGGTGGTAAAAGAGAGATCAGACGAGTCAGATTCAGCCGAGAAAGATTCGGGGAGAC GCATGCCAAAGTGTGGTGGGAAGAGAACCGAGCCAGGATACATCAACAATACATGTGA
AA sequence Show only first row Show all	>Potri.018G064900.4 pacid=42800504 polypeptide=Potri.018G064900.4.p locus=Potri.018G064900 ID=Potri.018G064900.4.v4.1 annot-version=v4.1 MLTCIARSKQPGDDSLSQPHAGSATTTNHPSAAKQHQAIKSLTSQLKDMALKASGAYRHCNPCTVPTTTTTTQSRLRSNWTASDAESERFRWPLQRTGSS SSITPRTWGKEMEARLKGISSSSGEGTPNSVNSSGRRVDPPIAFVEEKEPKEWVAQVEPGVLITLVSLPRGGNDLKRIRFSRDMFNKWQAQRWWAENYDR IMELYNVQRFNCQAFPLPPPPRSEDESSKMESAEDIPVTPPLNRERLPRNLYRPTGTGMGYSSSDSLDHHPIQARHYCDSTGLTSTPKLSSISGAKTETS SMDASIRSSSSREADCSGELSISNASDMETEWVEQDEQGVYITIRALPGGKREIRRVRFSRERFGETHAKVWWEENRARIHQQYM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G20540		ATBRXL4, BRX-LI...	BREVIS RADIX-like 4 (.1)		Potri.018G064900 [exp]	0	1
AT1G14020			O-fucosyltransferase family pr...		Potri.010G164700 [exp]	3.74	0.9338
AT5G39420		CDC2CAT	CDC2C (.1)		Potri.017G088200 [exp]	5.19	0.9046
AT1G26560		BGLU40	beta glucosidase 40 (.1)		Potri.008G094200 [exp]	5.65	0.9062	Pt-HIUHASE.1
AT4G22250			RING/U-box superfamily protein...		Potri.014G158900 [exp]	6.16	0.9155
AT1G32090			early-responsive to dehydratio...		Potri.001G133800 [exp]	6.70	0.9127
AT3G54750			unknown protein		Potri.016G065600 [exp]	9.16	0.9017
AT3G57830			Leucine-rich repeat protein ki...		Potri.016G050800 [exp]	10.90	0.9063
AT3G13480			unknown protein		Potri.001G003300 [exp]	12.24	0.9046
AT5G03680	Trihelix	PTL	PETAL LOSS, Duplicated homeodo...		Potri.008G025600 [exp]	12.24	0.9089
AT1G06920	OFP	ATOFP4, OFP4	ARABIDOPSIS THALIANA OVATE FAM...		Potri.013G155200 [exp]	14.07	0.8784

Compare expression of checked genes

Potri.018G064900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.