Plant FIBer expression Database

Potri.018G065000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G42800 139 / 9e-38 unknown protein
AT3G13980 127 / 2e-33 unknown protein
AT1G54200 124 / 5e-32 unknown protein
AT5G12050 62 / 2e-10 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G144700
[exp]
544 / 0 AT3G13980 130 / 2e-34 unknown protein
Potri.003G063400
[exp]
173 / 2e-49 AT1G54200 173 / 7e-50 unknown protein
Potri.001G170500
[exp]
165 / 2e-46 AT1G54200 167 / 2e-47 unknown protein
Potri.006G222700
[exp]
159 / 2e-44 AT1G54200 114 / 4e-28 unknown protein
Potri.018G049900
[exp]
133 / 1e-34 AT1G54200 122 / 5e-31 unknown protein
Potri.010G154200
[exp]
47 / 1e-05 AT1G69160 114 / 2e-29 unknown protein
Potri.008G098200
[exp]
44 / 0.0002 AT1G69160 134 / 2e-36 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10008457
[exp]
138 / 3e-37 AT3G13980 151 / 1e-42 unknown protein
Lus10025011
[exp]
116 / 1e-28 AT3G13980 115 / 1e-28 unknown protein
Lus10037659
[exp]
115 / 1e-28 AT3G13980 193 / 9e-59 unknown protein
Lus10026463
[exp]
112 / 2e-27 AT1G54200 107 / 7e-26 unknown protein
Lus10015641
[exp]
105 / 2e-25 AT3G13980 176 / 3e-52 unknown protein
PFAM info
Representative CDS sequence
>Potri.018G065000.1 pacid=42801207 polypeptide=Potri.018G065000.1.p locus=Potri.018G065000 ID=Potri.018G065000.1.v4.1 annot-version=v4.1
ATGTACAAGAAGGAGAGATCTTCAAGGGAAACCACATTCCCTCAGAGAAGAAGGACCCCATCTTTCTCTTCGACTCTTCTTGATTCTATTTACCGTTCGA
TTGATGATTCCAACGGCGAAGAACATGTGTTGGGGCGATACTCTAGAGAAACAACCATGATCAAGAAACAGGGTTGCAACTCTGTTTCAACAACCAGGCG
TGATGCATCATTTCTTGAAGGGGAGAAACAAGCATCTCCTACTCTTCGTCGAGCTGTCATGATTGAAAGCTGGATGGAGAAGCGAAGCTCTCGTGGCTCT
AAGCATTATAACGCGACCTCAAGCTCTTCAGACTCTAGCTCTGCAGGAGGAGGGGGCGGAGGAGGGGGAGGAGGAGATGTGTTCTCGTCCTCCGAAAATG
AGTCCAGTGTCAAAGAAAATTCGAGTTTTGCCCAACAAAGAACCAAACCACTTTCAGATACGCCACAACTGAAGCCAAGGTGTGAAGGCGGAGGCTTTAG
TAAGACAAAGTTAAGAGCATTAAAAATCTATGGTGAATTAAAGAAGGTAAAACAGCCAATTTCACCAGGTGGTCGCATTGCAAGCTTCCTAAATTCTATT
TTCAATTCAGCAAGTGCTGCAAAGAAGGTGAAAATGTGCTCTATTGGGGCCATGGAAGATGTAAGTTTCGAGCGTAAATCAAAGTCTGCTTGCTCATCGG
TTACTTCCTTTTCAAGGTCTTGTTTAAGCAAAACACCCCCTCCAAGAGGGAAACCAAGCAATGGCACAAAAAGGTCAGTTCGATTCTATCCAGTCAGTGT
CATTGTTGACGAGGATTCTAGACCTTGTGGGCATAAATGTATTTATGAAGATGATCCAGGATTGATGCCAGTGCCCCAAAAAGCTGTCAAGAGTACTTCT
GTCAGGGAATTAGAGGTTGCTAGAGGAGCAGCAGCAGGTTATTGGAGAAGGAGTTGTCATCAAAAGAAGAGTGTTAGTGAATTTGATTTCAGGGGCTTTC
ACAGCTATGTTGAAGGTGATGGTGATAGCAACAGTGATGATGATGAGAGTTGTTCAAGCTCTGATCTCTTTGAGCTGGATCATCTGATTGGGATTGGAAG
GTACAGAGAGGAGCTCCCAGTGTATGAAACCACTAATTTCAAAACTAATCAGTCCATTGCCAATGGCTTCATTCTGTAA
AA sequence
>Potri.018G065000.1 pacid=42801207 polypeptide=Potri.018G065000.1.p locus=Potri.018G065000 ID=Potri.018G065000.1.v4.1 annot-version=v4.1
MYKKERSSRETTFPQRRRTPSFSSTLLDSIYRSIDDSNGEEHVLGRYSRETTMIKKQGCNSVSTTRRDASFLEGEKQASPTLRRAVMIESWMEKRSSRGS
KHYNATSSSSDSSSAGGGGGGGGGGDVFSSSENESSVKENSSFAQQRTKPLSDTPQLKPRCEGGGFSKTKLRALKIYGELKKVKQPISPGGRIASFLNSI
FNSASAAKKVKMCSIGAMEDVSFERKSKSACSSVTSFSRSCLSKTPPPRGKPSNGTKRSVRFYPVSVIVDEDSRPCGHKCIYEDDPGLMPVPQKAVKSTS
VRELEVARGAAAGYWRRSCHQKKSVSEFDFRGFHSYVEGDGDSNSDDDESCSSSDLFELDHLIGIGRYREELPVYETTNFKTNQSIANGFIL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G42800 unknown protein Potri.018G065000
[exp]
0 1
AT3G54950 pPLAIIIbeta, PL... patatin-related phospholipase ... Potri.015G122700
[exp]
1.00 0.9632
AT2G40480 Plant protein of unknown funct... Potri.019G049201
[exp]
2.82 0.9434
AT1G28400 unknown protein Potri.011G057500
[exp]
5.19 0.9342
AT1G69430 unknown protein Potri.006G155900
[exp]
5.29 0.9196
AT1G69430 unknown protein Potri.006G159000
[exp]
6.78 0.9090
AT3G45230 hydroxyproline-rich glycoprote... Potri.009G013500
[exp]
7.21 0.9074
AT4G30320 CAP (Cysteine-rich secretory p... Potri.018G096007
[exp]
8.66 0.9296
AT1G80690 PPPDE putative thiol peptidase... Potri.001G047800
[exp]
8.94 0.9279
AT3G44610 Protein kinase superfamily pro... Potri.010G236200
[exp]
9.79 0.9299
AT2G30890 Cytochrome b561/ferric reducta... Potri.002G057900
[exp]
10.39 0.9274

Potri.018G065000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.