Plant FIBer expression Database

Potri.018G065100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G06530 332 / 7e-117 VPS2.1 SNF7 family protein (.1)
AT1G03950 132 / 3e-38 VPS2.3 vacuolar protein sorting-associated protein 2.3 (.1)
AT5G44560 126 / 5e-36 VPS2.2 SNF7 family protein (.1.2)
AT5G22950 64 / 3e-12 VPS24.1 SNF7 family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G170400
[exp]
312 / 5e-109 AT2G06530 326 / 2e-114 SNF7 family protein (.1)
Potri.001G442500
[exp]
132 / 4e-38 AT5G44560 328 / 3e-115 SNF7 family protein (.1.2)
Potri.011G154700
[exp]
130 / 2e-37 AT5G44560 331 / 1e-116 SNF7 family protein (.1.2)
Potri.005G227000
[exp]
130 / 2e-37 AT1G03950 309 / 3e-108 vacuolar protein sorting-associated protein 2.3 (.1)
Potri.002G035900
[exp]
125 / 8e-36 AT1G03950 308 / 8e-108 vacuolar protein sorting-associated protein 2.3 (.1)
Potri.006G144300
[exp]
89 / 6e-23 AT2G06530 62 / 7e-13 SNF7 family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10017166
[exp]
322 / 9e-113 AT2G06530 357 / 2e-126 SNF7 family protein (.1)
Lus10037660
[exp]
319 / 1e-111 AT2G06530 358 / 6e-127 SNF7 family protein (.1)
Lus10015642
[exp]
299 / 4e-103 AT2G06530 338 / 1e-118 SNF7 family protein (.1)
Lus10021561
[exp]
154 / 8e-48 AT2G06530 194 / 1e-63 SNF7 family protein (.1)
Lus10021562
[exp]
135 / 2e-41 AT2G06530 134 / 3e-41 SNF7 family protein (.1)
Lus10033914
[exp]
106 / 2e-28 AT1G03950 278 / 5e-96 vacuolar protein sorting-associated protein 2.3 (.1)
Lus10038407
[exp]
100 / 2e-25 AT5G44560 323 / 5e-113 SNF7 family protein (.1.2)
Lus10023396
[exp]
84 / 2e-19 AT5G44560 270 / 2e-91 SNF7 family protein (.1.2)
Lus10003538
[exp]
47 / 7e-07 AT1G03950 121 / 3e-36 vacuolar protein sorting-associated protein 2.3 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0235 PspA PF03357 Snf7 Snf7
Representative CDS sequence
>Potri.018G065100.1 pacid=42802041 polypeptide=Potri.018G065100.1.p locus=Potri.018G065100 ID=Potri.018G065100.1.v4.1 annot-version=v4.1
ATGAGTTTCCTCTTCGGCAAGAAAAAAACTCCCGCAGAACTTCTGCGGGAAAATAAGAGAATGTTGGACAAATCTATTAGAGAGATAGAGAGGGAGAGAC
AAGGTCTACAGACGCAAGAAAAGAAACTAATCGCTGAGATCAAGAAAAGTGCTAAGCAAGGGCAGATGGGAGCGGTGAAAGTAATGGCCAAGGACCTTAT
TAGGACTAGGCATCAAATAGAGAAATTCTATAAGCTCAAGTCACAGCTTCAGGGTGTATCTCTTAGAATTCAGACACTGAAATCGACGCAAGCAATGGGA
GAGGCGATGAAAGGTGTAACGAAAGCGATGGGCCAGATGAATAGGCAGATGAACTTGCCATCATTACAGAAAATTATGCAAGAATTTGAGAGGCAGAATG
AAAAGATGGAAATGGTGACTGAGGTGATGGGTGATGCCATTGATGATGCCTTGGAAGGGGATGAGGAAGAGGAAGAAACTGAAGACCTAGTGAACCAAGT
TCTTGATGAGATTGGAATTGACGTCAATCAGGAGCTTGTAAATGCACCATCATCTGCTGTTGCTGCCCCTGCTGCAAAAGGTAAGGTTGCACAAGTGGAA
ACGACAGGGAATGAAGACGGTGGAATAGACAGTGACTTGCAGGCAAGGCTAGACAATCTGAGAAGAATGTGA
AA sequence
>Potri.018G065100.1 pacid=42802041 polypeptide=Potri.018G065100.1.p locus=Potri.018G065100 ID=Potri.018G065100.1.v4.1 annot-version=v4.1
MSFLFGKKKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLIAEIKKSAKQGQMGAVKVMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMG
EAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMEMVTEVMGDAIDDALEGDEEEEETEDLVNQVLDEIGIDVNQELVNAPSSAVAAPAAKGKVAQVE
TTGNEDGGIDSDLQARLDNLRRM

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G06530 VPS2.1 SNF7 family protein (.1) Potri.018G065100
[exp]
0 1
AT5G42050 DCD (Development and Cell Deat... Potri.003G141900
[exp]
10.58 0.7288
AT1G72470 ATEXO70D1 exocyst subunit exo70 family p... Potri.003G068700
[exp]
10.95 0.7316
AT2G23140 RING/U-box superfamily protein... Potri.007G051000
[exp]
12.32 0.6546
AT5G16880 Target of Myb protein 1 (.1.2.... Potri.019G050000
[exp]
23.49 0.6480
AT3G53120 VPS37-1 Modifier of rudimentary (Mod(r... Potri.016G097000
[exp]
29.52 0.7021
AT5G28040 GeBP DNA-binding storekeeper protei... Potri.009G056400
[exp]
34.69 0.7133
AT5G37490 ARM repeat superfamily protein... Potri.008G137700
[exp]
35.00 0.7167
AT3G23280 XBAT35 XB3 ortholog 5 in Arabidopsis ... Potri.010G070750
[exp]
48.66 0.6325
Potri.014G022200
[exp]
50.62 0.6826
AT3G10640 VPS60.1 SNF7 family protein (.1.2) Potri.008G018300
[exp]
54.69 0.6363

Potri.018G065100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.