Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G06510 897 / 0 ATRPA70A, ATRPA1A ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT A, ARABIDOPSIS THALIANA REPLICATION PROTEIN A 1A, replication protein A 1A (.1.2) AT4G19130 648 / 0 Replication factor-A protein 1-related (.1) AT5G45400 595 / 0 ATRPA70C Replication factor-A protein 1-related (.1) AT5G08020 308 / 4e-96 ATRPA70B ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1) AT5G61000 288 / 5e-88 ATRPA70D Replication factor-A protein 1-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G102700 [exp] 711 / 0 AT5G45400 892 / 0.0 Replication factor-A protein 1-related (.1) Potri.015G057300 [exp] 298 / 4e-92 AT5G08020 875 / 0.0 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1) Potri.019G061550 [exp] 57 / 2e-08 AT1G52950 76 / 2e-14 Nucleic acid-binding, OB-fold-like protein (.1) Potri.001G165480 [exp] 51 / 1e-06 AT1G52950 52 / 3e-07 Nucleic acid-binding, OB-fold-like protein (.1) Potri.003G004401 [exp] 44 / 0.0001 AT1G52950 50 / 9e-07 Nucleic acid-binding, OB-fold-like protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033436 [exp] 675 / 0 AT2G06510 600 / 0.0 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT A, ARABIDOPSIS THALIANA REPLICATION PROTEIN A 1A, replication protein A 1A (.1.2) Lus10023805 [exp] 661 / 0 AT5G45400 764 / 0.0 Replication factor-A protein 1-related (.1) Lus10003955 [exp] 636 / 0 AT4G19130 715 / 0.0 Replication factor-A protein 1-related (.1) Lus10033435 [exp] 459 / 7e-159 AT2G06510 426 / 4e-147 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT A, ARABIDOPSIS THALIANA REPLICATION PROTEIN A 1A, replication protein A 1A (.1.2) Lus10034737 [exp] 435 / 1e-145 AT4G19130 517 / 2e-176 Replication factor-A protein 1-related (.1) Lus10033272 [exp] 309 / 7e-95 AT5G45400 363 / 2e-114 Replication factor-A protein 1-related (.1) Lus10040517 [exp] 292 / 1e-89 AT5G08020 885 / 0.0 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1) Lus10006548 [exp] 281 / 1e-85 AT5G08020 845 / 0.0 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1) Lus10021153 [exp] 288 / 2e-85 AT5G08020 884 / 0.0 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1) Lus10003268 [exp] 115 / 2e-27 AT5G08020 282 / 2e-89 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0021 [poplar] [flax] OB PF01336 [poplar] [flax] tRNA_anti-codon OB-fold nucleic acid binding domain CL0021 [poplar] [flax] OB PF04057 [poplar] [flax] Rep-A_N Replication factor-A protein 1, N-terminal domain CL0021 [poplar] [flax] OB PF08646 [poplar] [flax] Rep_fac-A_C Replication factor-A C terminal domain CL0021 [poplar] [flax] OB PF16900 [poplar] [flax] REPA_OB_2 Replication protein A OB domain
Representative CDS sequence Show only first row Show all	>Potri.018G065300.1 pacid=42801177 polypeptide=Potri.018G065300.1.p locus=Potri.018G065300 ID=Potri.018G065300.1.v4.1 annot-version=v4.1 ATGCCTGTGAATCTGACGCCGAATGCAATTGCGATGATAAACGGCGGCGATGTGAACTTGAAGCCGCTAGTTCAGGTTTTGGATATAAAACAGATGGGAA GCGCGCAGGAGAGGTTCAGGCTCCTCGTCTCTGATTCCGTTTTGACTCAGCACGCCATGCTCGGTACTCAGCTCAATGACCGAGTCAAGACTGGCCTTGT CAAGAAAGGATCTGTCATTCAATTGATCGATTACATTTGCAGCCAAGTTCAAAAGCGCAAGATTATTGTTGTGCTCAACTTGGAAACTATAATACCAGAC TGTGAAATAATTGGAAATCCAAAAATGGTCTCTGATGCTCCTGCTCAGAAGGCATTGCCTAATACCGACTCAATGCAGTCATCAATGGTTGATTATAACA ATCCGAGTTCTCAAAGTCATGGAAGTAATATGCACAGCATCAGGCCTGCTTTGAGCAGCCAAAATCATGGTGGAAATATGCAAAGTTTCCGGCCCACTTC AAGTACTCAAAATCAGGGCAGTAAAATGAGGAGTTTCCAGCCTGCTTTGGGTGCCCAAAATTATGGTAATGATGTGCAGAGTTTTCGACCGACAGTTCAA CCTCCATACCAACCCCCTCCAAGTTACAGAAATCATGGTGCAGTTATGAAGAATGAGGCACCAGCACGGATAATTCCTATTAATGCTTTGAATCCTTACC AGGGACGCTGGGCTATCAAAGCCAGAATAACTGCTAAAGGGGATCTTCGCCGCTATAATAATGCTCGGGGGGATGGGAAGGTCTTTTCCTTTGATCTTCT TGATTCTGATGGAGGTGAAATACGAGTGACCTGCTTCAATGCTGTTGTTGACCGCTTCTACGATGTTGTTGAAGTTGGTAAGGTTTATCTGATTTCAAAG GGTAGCTTAAAACCTGCTCAGAAGAATTTCAACCACCTGAAGAATGACTGGGAGATATTTTTGGAGGCAACTTCAACTGTGGATCCTTGCCCTGAAGAAG ATGGTTCTATACCACAACAGCAATTCTCCTTCAAACCCATTAGTGAAATTGAGATTGCTGAGAACAATTCCATATTTGATGTAATTGGTGTTGTGATATC CGTTAACCCTTCAGTTCCTATATTGAGAAAGAATGGTATGGAAACTCAAAGAAGAATTCTGAATCTGAAGGATGGTTCTGGTTGGACAGTTGAGCTAACC CTTTGGGGAGATTTCTGCAACAAGGAAGGTCAAAAGCTGCAAGAGATGGTTGATTCTGGGTTTTTTCCCATTTTAGCTGTCAAAGCTGGGAAGGTTAGTG ACTTCAATGGAAAATCTCTGGGAACAATTTCTTCTACTCAGCTCTTGATAAATCCAGATATTCCCGAGGCTCATGCTGCGAAAGACTGGTTTGATCGAGG GGGCCGTGATGTTGCTTCCATGTCTATTTCCAAAGACATTGCGCAAGGAGGACCCAAAAACGAGGTTCGCAAAACTGTGTCCCAGGTCAAGCTTGAAGGT CTTGGAAGATCAGATAAGCCTGATTGGGCCACTGTGAGGGCAAGCGTAAGTTTTATCAAAACAGATACATTCTGTTACACAGCCTGCCCTTTGATGATTG GAGATAGACAGTGTAACAAGAAAGTGACAAGATCCGGAAACTCAAGATGGCAGTGCGATAGATGCAATCAAGAATTTGACGACTGTGATTATAGGTATCT TCTTCAAGTTCAGATTCAGGACCACACAGGATTGACTTGGGCAACAGCATTCCAGGAGTCTGGGGAGGAGATATTGGGTTACCCAGCAAAGGAATTGTAC TTGTTGAAGTATGAATCCAATGATGATACCAGATTTGCAGACATAATCAGGAGCCGACTCTTTTACCAGTATATTTTCAAGCTCAAGATCAAAGAGGAAA TGTATGGGGATGAACGAAGGGTGAAGATAACAATTTTTAAGGCTGACAAGGTAAGCTATTCTTCAGAGAGCAGATACATGCTTGATTTGATTTCAAAAGT TCGTACATATTGA
AA sequence Show only first row Show all	>Potri.018G065300.1 pacid=42801177 polypeptide=Potri.018G065300.1.p locus=Potri.018G065300 ID=Potri.018G065300.1.v4.1 annot-version=v4.1 MPVNLTPNAIAMINGGDVNLKPLVQVLDIKQMGSAQERFRLLVSDSVLTQHAMLGTQLNDRVKTGLVKKGSVIQLIDYICSQVQKRKIIVVLNLETIIPD CEIIGNPKMVSDAPAQKALPNTDSMQSSMVDYNNPSSQSHGSNMHSIRPALSSQNHGGNMQSFRPTSSTQNQGSKMRSFQPALGAQNYGNDVQSFRPTVQ PPYQPPPSYRNHGAVMKNEAPARIIPINALNPYQGRWAIKARITAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYDVVEVGKVYLISK GSLKPAQKNFNHLKNDWEIFLEATSTVDPCPEEDGSIPQQQFSFKPISEIEIAENNSIFDVIGVVISVNPSVPILRKNGMETQRRILNLKDGSGWTVELT LWGDFCNKEGQKLQEMVDSGFFPILAVKAGKVSDFNGKSLGTISSTQLLINPDIPEAHAAKDWFDRGGRDVASMSISKDIAQGGPKNEVRKTVSQVKLEG LGRSDKPDWATVRASVSFIKTDTFCYTACPLMIGDRQCNKKVTRSGNSRWQCDRCNQEFDDCDYRYLLQVQIQDHTGLTWATAFQESGEEILGYPAKELY LLKYESNDDTRFADIIRSRLFYQYIFKLKIKEEMYGDERRVKITIFKADKVSYSSESRYMLDLISKVRTY

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G06510		ATRPA70A, ATRPA...	ARABIDOPSIS THALIANA RPA70-KDA...		Potri.018G065300 [exp]	0	1
AT2G34430		LHCB1.4, LHB1B1	light-harvesting chlorophyll-p...		Potri.011G079500 [exp]	1.00	0.9920	Lhcb1-1,Pt-LHB1.2
AT1G58684			Ribosomal protein S5 family pr...		Potri.001G256800 [exp]	2.00	0.9869
AT1G30380		PSAK	photosystem I subunit K (.1)		Potri.018G027600 [exp]	2.44	0.9910	Pt-PSAK.1
AT1G74730			Protein of unknown function (D...		Potri.012G070600 [exp]	3.00	0.9900
AT5G54270		LHCB3*1, LHCB3*...	light-harvesting chlorophyll B...		Potri.011G126700 [exp]	3.16	0.9781
AT5G54270		LHCB3*1, LHCB3*...	light-harvesting chlorophyll B...		Potri.001G407100 [exp]	3.16	0.9869	Lhcb3-1,LHCB3.2
AT1G15820		CP24, LHCB6	light harvesting complex photo...		Potri.003G020400 [exp]	4.00	0.9842
AT2G30570		PSBW	photosystem II reaction center...		Potri.002G044300 [exp]	4.24	0.9864
AT4G14890		FdC2	ferredoxin C 2, 2Fe-2S ferredo...		Potri.010G087300 [exp]	6.48	0.9842
AT1G75690		LQY1	LOW QUANTUM YIELD OF PHOTOSYST...		Potri.002G023600 [exp]	8.36	0.9715

Compare expression of checked genes

Potri.018G065300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.