Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13960 182 / 2e-53 GRF ATGRF5 growth-regulating factor 5 (.1) AT2G06200 160 / 5e-47 GRF ATGRF6 growth-regulating factor 6 (.1) AT4G37740 145 / 7e-39 GRF ATGRF2 growth-regulating factor 2 (.1) AT2G36400 134 / 2e-35 GRF ATGRF3 growth-regulating factor 3 (.1) AT2G22840 130 / 3e-33 GRF ATGRF1 growth-regulating factor 1 (.1) AT3G52910 126 / 1e-32 GRF ATGRF4 growth-regulating factor 4 (.1) AT5G53660 112 / 1e-27 GRF ATGRF7 growth-regulating factor 7 (.1) AT4G24150 96 / 2e-21 GRF ATGRF8 growth-regulating factor 8 (.1) AT2G45480 77 / 2e-15 GRF ATGRF9 growth-regulating factor 9 (.1) AT1G09060 43 / 0.0004 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G143200 [exp] 528 / 0 AT3G13960 188 / 7e-56 growth-regulating factor 5 (.1) Potri.001G169100 [exp] 241 / 4e-77 AT3G13960 206 / 4e-63 growth-regulating factor 5 (.1) Potri.003G065000 [exp] 232 / 2e-73 AT3G13960 200 / 4e-61 growth-regulating factor 5 (.1) Potri.019G042300 [exp] 192 / 3e-58 AT3G13960 157 / 2e-44 growth-regulating factor 5 (.1) Potri.013G077500 [exp] 172 / 2e-50 AT3G13960 160 / 1e-45 growth-regulating factor 5 (.1) Potri.001G132600 [exp] 161 / 5e-46 AT4G37740 142 / 6e-38 growth-regulating factor 2 (.1) Potri.014G012800 [exp] 153 / 4e-41 AT2G22840 303 / 1e-95 growth-regulating factor 1 (.1) Potri.002G115100 [exp] 151 / 1e-40 AT2G22840 302 / 2e-95 growth-regulating factor 1 (.1) Potri.014G007200 [exp] 150 / 5e-40 AT2G22840 360 / 7e-118 growth-regulating factor 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000473 [exp] 300 / 8e-99 AT3G13960 187 / 5e-55 growth-regulating factor 5 (.1) Lus10033441 [exp] 298 / 6e-98 AT3G13960 191 / 3e-56 growth-regulating factor 5 (.1) Lus10020352 [exp] 168 / 7e-49 AT3G13960 167 / 2e-48 growth-regulating factor 5 (.1) Lus10009533 [exp] 166 / 1e-46 AT3G13960 162 / 7e-45 growth-regulating factor 5 (.1) Lus10037668 [exp] 159 / 1e-46 AT3G13960 156 / 1e-45 growth-regulating factor 5 (.1) Lus10015651 [exp] 157 / 8e-46 AT3G13960 155 / 5e-45 growth-regulating factor 5 (.1) Lus10004455 [exp] 159 / 3e-45 AT3G13960 150 / 8e-42 growth-regulating factor 5 (.1) Lus10014380 [exp] 138 / 3e-38 AT2G36400 181 / 5e-55 growth-regulating factor 3 (.1) Lus10011558 [exp] 139 / 1e-36 AT2G22840 268 / 2e-83 growth-regulating factor 1 (.1) Lus10019274 [exp] 137 / 5e-36 AT2G22840 261 / 4e-81 growth-regulating factor 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08879 [poplar] [flax] WRC WRC PF08880 [poplar] [flax] QLQ QLQ
Representative CDS sequence Show only first row Show all	>Potri.018G065400.1 pacid=42801424 polypeptide=Potri.018G065400.1.p locus=Potri.018G065400 ID=Potri.018G065400.1.v4.1 annot-version=v4.1 ATGATAATGAGTGGAGGAAACAGGTTTCCCTTCACTGCATCCCAGTGGCAAGAGCTTGAGCATCAAGCACTAATCTACAAGTACATGGTTTCTGGCATCC CCATCCCTCCTGATCTCCTCTTCACCATCAAAAGAAGCGTCTGTTTGGACTCTTCAAAGCTCTTTCCTCACCAACATCCACATTTTGCTTGGAGCTGTTT TCAGATGGGTTTAGGGAGGAAAACGGATCCAGAACCAGGGAGGTGCAGGAGAACAGATGGAAAGAAATGGAGATGCTCAAAAGAAGCATACCCAGATTCC AAGTACTGTGAGAGACACATGCATAGAGGGAAGAACCGTTCAAGAAAGCCTGTGGAAGTTGCAACACAAACACAATCAACATCGCCACCAACTGTCTCAT CAATCACCAGAAACCACTCTAATAACTCATTACTAACAACATCCTCCCATTCTCATCTTTCGTTATTAATGTCACCTGAGACCCAACACCAGAATCACCT TCACTATCCTGCAGGTTACCATGCCCATCCAAACCATCAATTTTTGTCTTCTTCAACACCCACCGGAATTGGTCTGTTACCTCAAGAAAATTCTACCCAC TTGCTTTTGGACTCTGGTGGTTCTTCTATGACCAATACAGATTTCAGGAGGAGTGTTTACGGGCTGAAAGAGGAGGTTGACGAACATGCTTTCTTCTCAG AACCTTCAGGTTCTATGAGACGCTTGTCTGGTTCATCTTTGGATGATGCTTGGCAACTCACCCCGCTCACAATGAACTCTTCTTCTTCTAGTACCAATTC TTCAAAGCAGAGGAGTTTGTCTAGTTTACATAATGAGTATTCTTATTTGCAGCTTCAAAGCCTATGCGATCATGATATCCCAAAACAACAAAAACAGCAT CAACATAACTATCTTCTGGGAAATGATATAAGTAATCTAGGACCCATAAAAATGGAGAAGGAAGAACCCCAAAAGACTGTTCATCGTTTCTTTGATGAGT GGCCACCAAAGAATAAAGAATCGTGGTTTGATTTGGATAACAGATCATCAAACAGTGCTTCAGTTTCAACAACGAGGCTCTCAATATCCATTCCTTCATC ACATGACTTTCTTCCGATATTTAATTCAAGAACTAATAATGATGCTTGA
AA sequence Show only first row Show all	>Potri.018G065400.1 pacid=42801424 polypeptide=Potri.018G065400.1.p locus=Potri.018G065400 ID=Potri.018G065400.1.v4.1 annot-version=v4.1 MIMSGGNRFPFTASQWQELEHQALIYKYMVSGIPIPPDLLFTIKRSVCLDSSKLFPHQHPHFAWSCFQMGLGRKTDPEPGRCRRTDGKKWRCSKEAYPDS KYCERHMHRGKNRSRKPVEVATQTQSTSPPTVSSITRNHSNNSLLTTSSHSHLSLLMSPETQHQNHLHYPAGYHAHPNHQFLSSSTPTGIGLLPQENSTH LLLDSGGSSMTNTDFRRSVYGLKEEVDEHAFFSEPSGSMRRLSGSSLDDAWQLTPLTMNSSSSSTNSSKQRSLSSLHNEYSYLQLQSLCDHDIPKQQKQH QHNYLLGNDISNLGPIKMEKEEPQKTVHRFFDEWPPKNKESWFDLDNRSSNSASVSTTRLSISIPSSHDFLPIFNSRTNNDA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G13960	GRF	ATGRF5	growth-regulating factor 5 (.1...		Potri.018G065400 [exp]	0	1
AT1G69040		ACR4	ACT domain repeat 4 (.1.2)		Potri.015G100300 [exp]	1.00	0.8136
AT1G50660			unknown protein		Potri.011G003200 [exp]	18.70	0.7681
AT1G65900			unknown protein		Potri.017G139400 [exp]	24.33	0.7746
AT5G13460		IQD11	IQ-domain 11 (.1)		Potri.001G021000 [exp]	26.26	0.7456
AT4G32890	GATA	GATA9	GATA transcription factor 9 (....		Potri.019G033000 [exp]	27.38	0.7834
AT5G55730		FLA1	FASCICLIN-like arabinogalactan...		Potri.011G093500 [exp]	30.46	0.8054
AT1G02930		ATGST1, GST1, E...	EARLY RESPONSIVE TO DEHYDRATIO...		Potri.002G207286 [exp]	51.49	0.7589
AT5G07040			RING/U-box superfamily protein...		Potri.003G192700 [exp]	51.57	0.7938
AT4G31980			unknown protein		Potri.013G146300 [exp]	60.92	0.7883
AT1G11200			Protein of unknown function (D...		Potri.011G044200 [exp]	62.66	0.7753

Compare expression of checked genes

Potri.018G065400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.