Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G35560 129 / 1e-33 DENN (AEX-3) domain-containing protein (.1) AT2G20320 79 / 1e-16 DENN (AEX-3) domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G255500 [exp] 83 / 8e-18 AT2G20320 906 / 0.0 DENN (AEX-3) domain-containing protein (.1) Potri.006G143000 [exp] 0 / 1 AT5G35560 879 / 0.0 DENN (AEX-3) domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000499 [exp] 81 / 4e-17 AT2G20320 918 / 0.0 DENN (AEX-3) domain-containing protein (.1) Lus10022854 [exp] 71 / 1e-13 AT2G20320 852 / 0.0 DENN (AEX-3) domain-containing protein (.1) Lus10033443 [exp] 0 / 1 AT5G35560 856 / 0.0 DENN (AEX-3) domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0330 [poplar] [flax] AVL9 PF02141 [poplar] [flax] DENN DENN (AEX-3) domain
Representative CDS sequence Show only first row Show all	>Potri.018G065501.1 pacid=42801546 polypeptide=Potri.018G065501.1.p locus=Potri.018G065501 ID=Potri.018G065501.1.v4.1 annot-version=v4.1 ATGTTGACGACACAGAGACAGAAGAGGCATCTTTTTCTGGCCAAGAAGATTCGAGTGATCGCATTGATATTCTTGAATGGGCAAAGGCAAATAACCATGG ATCATTGCAGCTTCTGTGTGAGTATTACCAGTTACATTTCCCTTCTGGGGGTTCTACTCTTAGATTTCAGCCTTTGGCTTCATCCCTTGGAATATCATAG ACCTGATGGAGCTGTTTTACTTATTAATGGCTCAACTACTGATTTGAGATCCTGCAGTGCAAGTCTGGAACTTGCGGAGGCACACCATGCACTCTTGGCA GAGGAGGAAGCAACTGCATTATCAACCTGGGCCGTTGCATGTATATGCGGATCCATGCGACTTGAGCATATCTTGACATTGTTTGCAGGAGCCCTGCTAG AGAAGCAGACTGTGGTTCTTTGTTCTAATTTGGGAATCTTGTCTGCTTCAGTTTTGTCAATTATCCCTCTAATTCGTCCCTATCGGTGGCAAAGCTTGCT GATGCCGATTTTACCAGATGACATGCTGGACTTTTTGGATGCTCCTGTTCCATACATTGTGAGTTTCATTTTCCAGCTAGCCTCGTTATCCTCAAGTGCT AGGTTCCTATCTGTTTGGAATGAACTATATCTATTGTGTAAGGTAGGTGGATTCTGCGTTCTTATGTGTGCGCTAGTACTGTTGTTCCACTGTCTCATCC AAGCTAACAGCTTAAAAGCAAACAATCTCACTGTTATGATCACACTTTTTTGTCTAATGTTGGTACTGACTTGTTCGGTTTGA
AA sequence Show only first row Show all	>Potri.018G065501.1 pacid=42801546 polypeptide=Potri.018G065501.1.p locus=Potri.018G065501 ID=Potri.018G065501.1.v4.1 annot-version=v4.1 MLTTQRQKRHLFLAKKIRVIALIFLNGQRQITMDHCSFCVSITSYISLLGVLLLDFSLWLHPLEYHRPDGAVLLINGSTTDLRSCSASLELAEAHHALLA EEEATALSTWAVACICGSMRLEHILTLFAGALLEKQTVVLCSNLGILSASVLSIIPLIRPYRWQSLLMPILPDDMLDFLDAPVPYIVSFIFQLASLSSSA RFLSVWNELYLLCKVGGFCVLMCALVLLFHCLIQANSLKANNLTVMITLFCLMLVLTCSV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G35560			DENN (AEX-3) domain-containing...		Potri.018G065501 [exp]	0	1
AT1G55570		SKS12	SKU5 similar 12 (.1)		Potri.001G000600 [exp]	2.64	0.6945
AT4G09190			F-box and associated interacti...		Potri.005G254500 [exp]	22.04	0.6553
					Potri.010G023150 [exp]	23.45	0.5579
AT1G04020		ROW1, ATBARD1, ...	breast cancer associated RING ...		Potri.002G259000 [exp]	52.64	0.5800
					Potri.014G176075 [exp]	105.76	0.5108
AT3G02020		AK3	aspartate kinase 3 (.1)		Potri.002G236800 [exp]	109.69	0.5234
AT3G24650	B3	SIS10, ABI3	SUGAR INSENSITIVE 10, ABSCISIC...		Potri.002G252000 [exp]	265.44	0.4910	ABI3.1

Compare expression of checked genes

Potri.018G065501 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.