Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G72710 679 / 0 CKL2 casein kinase 1-like protein 2 (.1) AT4G26100 660 / 0 CKL1, CK1 casein kinase 1 (.1) AT5G57015 634 / 0 CKL12 casein kinase I-like 12 (.1) AT2G19470 572 / 0 CKL5 casein kinase I-like 5 (.1) AT1G03930 517 / 0 ADK1, CKL9ALPHA, CKL9BETA CASEIN KINASE I-LIKE 9 BETA, CASEIN KINASE I-LIKE 9 ALPHA, dual specificity kinase 1 (.1) AT3G23340 516 / 0 CKL10 casein kinase I-like 10 (.1) AT5G44100 516 / 0 CKL7 casein kinase I-like 7 (.1) AT4G14340 500 / 2e-175 CKL11, CKI1 CASEIN KINASE I-LIKE 11, casein kinase I (.1) AT4G28540 499 / 6e-175 CKL6, PAPK1 casein kinase I-like 6 (.1) AT1G04440 490 / 2e-171 CKL13 casein kinase like 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G147800 [exp] 840 / 0 AT1G72710 674 / 0.0 casein kinase 1-like protein 2 (.1) Potri.001G197600 [exp] 707 / 0 AT1G72710 644 / 0.0 casein kinase 1-like protein 2 (.1) Potri.003G043500 [exp] 692 / 0 AT1G72710 640 / 0.0 casein kinase 1-like protein 2 (.1) Potri.010G070400 [exp] 518 / 0 AT3G23340 680 / 0.0 casein kinase I-like 10 (.1) Potri.005G226900 [exp] 516 / 0 AT4G28540 645 / 0.0 casein kinase I-like 6 (.1) Potri.002G036000 [exp] 516 / 0 AT4G28540 650 / 0.0 casein kinase I-like 6 (.1) Potri.008G168100 [exp] 511 / 8e-180 AT3G23340 656 / 0.0 casein kinase I-like 10 (.1) Potri.013G047200 [exp] 501 / 1e-175 AT4G14340 643 / 0.0 CASEIN KINASE I-LIKE 11, casein kinase I (.1) Potri.018G084500 [exp] 485 / 5e-170 AT4G28880 632 / 0.0 casein kinase I-like 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027628 [exp] 772 / 0 AT4G26100 702 / 0.0 casein kinase 1 (.1) Lus10011940 [exp] 754 / 0 AT4G26100 680 / 0.0 casein kinase 1 (.1) Lus10006879 [exp] 649 / 0 AT1G72710 664 / 0.0 casein kinase 1-like protein 2 (.1) Lus10037621 [exp] 646 / 0 AT1G72710 655 / 0.0 casein kinase 1-like protein 2 (.1) Lus10006018 [exp] 640 / 0 AT1G72710 649 / 0.0 casein kinase 1-like protein 2 (.1) Lus10033913 [exp] 521 / 0 AT4G28540 663 / 0.0 casein kinase I-like 6 (.1) Lus10021175 [exp] 519 / 0 AT4G14340 701 / 0.0 CASEIN KINASE I-LIKE 11, casein kinase I (.1) Lus10022029 [exp] 519 / 0 AT3G23340 649 / 0.0 casein kinase I-like 10 (.1) Lus10042570 [exp] 515 / 0 AT3G23340 653 / 0.0 casein kinase I-like 10 (.1) Lus10014661 [exp] 508 / 2e-178 AT3G23340 637 / 0.0 casein kinase I-like 10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.018G065900.6 pacid=42802082 polypeptide=Potri.018G065900.6.p locus=Potri.018G065900 ID=Potri.018G065900.6.v4.1 annot-version=v4.1 ATGGAGCCTCGTGTTGGTAATAAGTTCAGGCTGGGTCGGAAGATCGGCAGCGGTTCCTTTGGAGAGATCTATCTAGGTACTAATATCCAGACTAATGAAG AAGTCGCCATTAAGCTCGAGAACATCAAGACAAAACATCCTCAGTTGCTATATGAATCCAAGTTATACAGAATCCTGCAGGGAGGGACTGGGATTCCAAA TGTGAGGTGGTTTGGAGTTGAGGGAGACTATAATGTCCTAGTGATGGATTTGCTTGGACCTAGTCTTGAAGACCTCTTTAACTTCTGCAGTAGGAAACTC TCTTTGAAGTCAGTCCTTATGCTTGCTGATCAGATGATCAATCGTGTCGAGTTCGTCCACTCGAAATCATTTCTGCATCGAGATATTAAGCCAGACAACT TTCTCATGGGCTTGGGAAGGCGTGCAAATCAGGTATACATCATCGACTTTGGTCTGGCAAAGAAATACAGAGATAGTTCAACCCATCAACACATTCCTTA CAGGGAAAATAAAAATTTGACTGGAACTGCTAGATATGCAAGCATGAACACTCACCTGGGCATTGAGCAAAGCCGGAGGGATGATCTAGAATCACTTGGT TATGTCCTTATGTACTTCCTGAGAGGAAGCCTTCCGTGGCAGGGACTAAAGGCTGGAACTAAGAAACAGAAGTATGAGAAAATTAGTGAAAAGAAGGTCT CTACTTCAATTGAGGCCCTTTGTCGTGGTTATCCAACTGAATTTGCCTCTTACTTTCATTATTGTCGTTCACTTCGATTCGATGATAAGCCAGATTATGC TTATTTGAAGAGAATATTTCGTGATCTCTTTATTCGTGAGGGCTTCCAGTTTGATTATGTCTTTGACTGGACAATATTGAAGTATCAGCAATCACAGCTG GCTAATCCTCCAACTCGTGGCATTGGCCCTGGTGTTGGAACTAGTTCTGGCATGCCTCCTATTGTCAGTGCAGATAGACAAACAGGTGGAGAAGAAGGGC GAGCAGTTGGCCAGTCAATGGACTCATCTCGCCACAGACTATCAGGACCAATCTTAAATGCTGGAAGCTATTCAAAGCAGAAGAGTCCAGTTGCTAATGA TTATCCAATTACTAAGGACGCTGTGTTACCCAGCTCTACTTTTTTGGGGCGATCAAGTGGATCCGCAAGGCGAGCTGCAGGTGTTTCCAGTAGCCGCGAT GTATTTGCTGCTGCAAGTGAGTCTGATCCCCAATGGTCTCGCATAACTGATGCAAGCCCAGGAGCAATACACAAAATTTCTAGTGGGCCAAGAAGTCCTC TTGGATCTTCAGACCCCAGGCGCACTTCATCAAGCAGAAATACCACTCACATGAAGACCTATGAAACCACCCTTAAGGGAATTGAGAGTCTGAATTTTGA TAGTGATGAGAAGGTTCACTATTAG
AA sequence Show only first row Show all	>Potri.018G065900.6 pacid=42802082 polypeptide=Potri.018G065900.6.p locus=Potri.018G065900 ID=Potri.018G065900.6.v4.1 annot-version=v4.1 MEPRVGNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENIKTKHPQLLYESKLYRILQGGTGIPNVRWFGVEGDYNVLVMDLLGPSLEDLFNFCSRKL SLKSVLMLADQMINRVEFVHSKSFLHRDIKPDNFLMGLGRRANQVYIIDFGLAKKYRDSSTHQHIPYRENKNLTGTARYASMNTHLGIEQSRRDDLESLG YVLMYFLRGSLPWQGLKAGTKKQKYEKISEKKVSTSIEALCRGYPTEFASYFHYCRSLRFDDKPDYAYLKRIFRDLFIREGFQFDYVFDWTILKYQQSQL ANPPTRGIGPGVGTSSGMPPIVSADRQTGGEEGRAVGQSMDSSRHRLSGPILNAGSYSKQKSPVANDYPITKDAVLPSSTFLGRSSGSARRAAGVSSSRD VFAAASESDPQWSRITDASPGAIHKISSGPRSPLGSSDPRRTSSSRNTTHMKTYETTLKGIESLNFDSDEKVHY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G72710		CKL2	casein kinase 1-like protein 2...		Potri.018G065900 [exp]	0	1
AT5G56510		APUM12	pumilio 12 (.1)		Potri.001G002600 [exp]	1.73	0.8897
AT5G13000		CALS3, ATGSL12	callose synthase 3, glucan syn...		Potri.003G214200 [exp]	3.46	0.8648	CALS1.4
AT3G59090			unknown protein		Potri.005G203600 [exp]	4.47	0.8417
AT5G45610		SUV2	SENSITIVE TO UV 2, protein dim...		Potri.003G098700 [exp]	5.29	0.8502
AT5G05570			transducin family protein / WD...		Potri.008G069700 [exp]	7.07	0.8797
AT5G28350			Quinoprotein amine dehydrogena...		Potri.014G087900 [exp]	7.74	0.8677
AT5G06120			ARM repeat superfamily protein...		Potri.003G189500 [exp]	7.93	0.8393
AT5G04930		ALA1	aminophospholipid ATPase 1 (.1...		Potri.016G138000 [exp]	12.44	0.8328
AT4G38270		GAUT3	galacturonosyltransferase 3 (....		Potri.004G206000 [exp]	13.22	0.8350
AT1G08030		AQC1, TPST	active quiescent center1, tyro...		Potri.009G011400 [exp]	16.97	0.8515

Compare expression of checked genes

Potri.018G065900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.