Plant FIBer expression Database

Potri.018G066100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G19450 691 / 0 RDS1, DGAT1, ATDGAT, AS11, ABX45, TAG1 TRIACYLGLYCEROL BIOSYNTHESIS DEFECT 1, acyl-CoA:diacylglycerol acyltransferase 1, Arabidopsis thaliana acyl-CoA:diacylglycerol acyltransferase, membrane bound O-acyl transferase (MBOAT) family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G147600
[exp]
865 / 0 AT2G19450 690 / 0.0 TRIACYLGLYCEROL BIOSYNTHESIS DEFECT 1, acyl-CoA:diacylglycerol acyltransferase 1, Arabidopsis thaliana acyl-CoA:diacylglycerol acyltransferase, membrane bound O-acyl transferase (MBOAT) family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10017154
[exp]
738 / 0 AT2G19450 697 / 0.0 TRIACYLGLYCEROL BIOSYNTHESIS DEFECT 1, acyl-CoA:diacylglycerol acyltransferase 1, Arabidopsis thaliana acyl-CoA:diacylglycerol acyltransferase, membrane bound O-acyl transferase (MBOAT) family protein (.1)
Lus10021582
[exp]
729 / 0 AT2G19450 692 / 0.0 TRIACYLGLYCEROL BIOSYNTHESIS DEFECT 1, acyl-CoA:diacylglycerol acyltransferase 1, Arabidopsis thaliana acyl-CoA:diacylglycerol acyltransferase, membrane bound O-acyl transferase (MBOAT) family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0517 MBOAT-like PF03062 MBOAT MBOAT, membrane-bound O-acyltransferase family
Representative CDS sequence
>Potri.018G066100.1 pacid=42800615 polypeptide=Potri.018G066100.1.p locus=Potri.018G066100 ID=Potri.018G066100.1.v4.1 annot-version=v4.1
ATGGCGGAGTCAGAGTCACCGGAGAATCGTATAGCGGCAATGGAAAGTACATCTTCCTCGACGTCAGATCTCAACTTCTCTATTCGACGGAGGTCTACAG
TCATGGACTCGGCTTCGACGGAAATGATGGGATCGGAGGGTTTGAAAAGTAGTGGTAAAGCATGCGATAAGGTTAAGATTGAGAAGCAATCAGATATGAA
ATTCAATTATCGGCCATCAATGCCCGCTCATAGTGGTGTTAGAGAGAGTCCTCTTAGTTCTGATGCTATTTTTAAACAAAGTCATGCAGGTCTCTTCAAT
CTCTGTATAGTAGTGCTTGTGGCTGTAAACAGCAGGCTTATCATTGAAAATTTAATCAAGTACGGCTGGTTAATCAATTCAGGATTTTGGTTTAGTTCAA
AATCATTAAGAGACTGGCCCCTGTTTATGTGCTGTCTTAGTCTTCCAGCATTCCCTCTCGCGGCCTATCTCGTTGAGAAGTTGGCATATCGAAATTGTAT
ATCTGAACTTGTTGTTGTTTTCCTTCATATAATCATCACCACAGCATCACTTTTGTATCCAGTTTTAGTAATTCTCAGGTGTGATTCTGCTTTACTATCT
GGTGGCACATTAATGCTCTTTGCTTGCATTGTGTGGTTGAAATTGGTATCTTTTGCACATACAAGCTCTGATATGAGAGCAATTGCCAAGTCAATTGATA
AGGAAAATACCGCATCCATTTCTTCGAATGCAGATAATTCTTATGATGCTAACTTTAAGAGTTTGGTCTACTTCATGGTGGCTCCCACATTATGTTACCA
GTCAAGCTATCCTCGTTCTGCATCTGTTCGAAAGGGTTGGGTGGTTCGACAATTTGTCAAGTTAATAATATTTACTGGATTCATGGGATTTATCATAGAA
CAATATATCAATCCTATTGTTCAGAACTCGCAGCACCCTTTGAAAGGAAATCTCTTGTATGCCATTGAGAGGGTCTTGAAGCTCTCGGTTCCTAATTTAT
ATGTTTGGCTCTGCATGTTCTACTGCTTTTTCCACTTGTGGTTAAATATACTTGCCGAGCTCCTTCGCTTTGGTGATCGGGAGTTCTACAAGGATTGGTG
GAATGCAAGAACTGTTGAAGAGTACTGGAGAATGTGGAATATGCCAGTTCATAAGTGGATGGTTCGCCATATCTATTTTCCATGTTTACGGAATAAAATA
CCAAAGTGGGCAGCCTTACTTATTGCCTTCTTTGTCTCAGCTGTATTTCATGAGTTGTGTATTGCTGTTCCTTGCCACATGTTCAAGCTCTGGGCATTTA
TTGGAATTATGTTTCAGGTTCCCTTAGTGGTGATCACAAAATTCCTTCAAAATAAGTTCAAAAGCTCAATGGTGGGCAATATGATCTTCTGGTTATTTTT
CAGCATTCTTGGTCAACCTATGTGTGTGCTTCTATATTACCATGACTTGATGAATCGGAAAGGGAAAACTGAATGA
AA sequence
>Potri.018G066100.1 pacid=42800615 polypeptide=Potri.018G066100.1.p locus=Potri.018G066100 ID=Potri.018G066100.1.v4.1 annot-version=v4.1
MAESESPENRIAAMESTSSSTSDLNFSIRRRSTVMDSASTEMMGSEGLKSSGKACDKVKIEKQSDMKFNYRPSMPAHSGVRESPLSSDAIFKQSHAGLFN
LCIVVLVAVNSRLIIENLIKYGWLINSGFWFSSKSLRDWPLFMCCLSLPAFPLAAYLVEKLAYRNCISELVVVFLHIIITTASLLYPVLVILRCDSALLS
GGTLMLFACIVWLKLVSFAHTSSDMRAIAKSIDKENTASISSNADNSYDANFKSLVYFMVAPTLCYQSSYPRSASVRKGWVVRQFVKLIIFTGFMGFIIE
QYINPIVQNSQHPLKGNLLYAIERVLKLSVPNLYVWLCMFYCFFHLWLNILAELLRFGDREFYKDWWNARTVEEYWRMWNMPVHKWMVRHIYFPCLRNKI
PKWAALLIAFFVSAVFHELCIAVPCHMFKLWAFIGIMFQVPLVVITKFLQNKFKSSMVGNMIFWLFFSILGQPMCVLLYYHDLMNRKGKTE

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G19450 RDS1, DGAT1, AT... TRIACYLGLYCEROL BIOSYNTHESIS D... Potri.018G066100
[exp]
0 1
AT1G64980 Nucleotide-diphospho-sugar tra... Potri.019G042500
[exp]
10.77 0.6969
AT1G75150 unknown protein Potri.002G262800
[exp]
15.00 0.7483
AT1G53035 unknown protein Potri.001G399900
[exp]
23.53 0.7561
AT5G17990 PAT1, TRP1 PHOSPHORIBOSYLANTHRANILATE TRA... Potri.012G082700
[exp]
25.69 0.7190
AT1G17200 Uncharacterised protein family... Potri.001G436400
[exp]
33.43 0.7161
AT4G00720 ASKTHETA, ATSK3... SHAGGY-LIKE PROTEIN KINASE THE... Potri.002G155000
[exp]
41.71 0.7182
AT5G17050 UGT78D2 UDP-glucosyl transferase 78D2 ... Potri.013G143900
[exp]
43.08 0.7084 FGT1
AT4G38790 ER lumen protein retaining rec... Potri.004G167400
[exp]
53.57 0.6884
AT5G11190 AP2_ERF SHN2, SHN3 shine2, Integrase-type DNA-bin... Potri.006G253800
[exp]
59.12 0.6665
AT1G54520 unknown protein Potri.008G152400
[exp]
60.59 0.7058

Potri.018G066100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.