Plant FIBer expression Database

CDA1.2 (Potri.018G066400) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol CDA1.2
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G19570 386 / 2e-135 DESZ, AT-CDA1, CDA1 cytidine deaminase 1 (.1)
AT4G29600 278 / 9e-93 Cytidine/deoxycytidylate deaminase family protein (.1)
AT4G29610 269 / 2e-89 Cytidine/deoxycytidylate deaminase family protein (.1)
AT4G29620 244 / 5e-79 Cytidine/deoxycytidylate deaminase family protein (.1)
AT4G29640 227 / 2e-72 Cytidine/deoxycytidylate deaminase family protein (.1)
AT4G29570 198 / 8e-62 Cytidine/deoxycytidylate deaminase family protein (.1)
AT4G29630 193 / 9e-61 Cytidine/deoxycytidylate deaminase family protein (.1)
AT4G29650 180 / 3e-55 Cytidine/deoxycytidylate deaminase family protein (.1)
AT4G29580 158 / 2e-46 Cytidine/deoxycytidylate deaminase family protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G150600
[exp]
556 / 0 AT2G19570 357 / 3e-124 cytidine deaminase 1 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10018355
[exp]
367 / 2e-128 AT2G19570 350 / 6e-122 cytidine deaminase 1 (.1)
Lus10007654
[exp]
358 / 4e-124 AT2G19570 340 / 2e-117 cytidine deaminase 1 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0109 CDA PF00383 dCMP_cyt_deam_1 Cytidine and deoxycytidylate deaminase zinc-binding region
CL0109 CDA PF08211 dCMP_cyt_deam_2 Cytidine and deoxycytidylate deaminase zinc-binding region
Representative CDS sequence
>Potri.018G066400.1 pacid=42800893 polypeptide=Potri.018G066400.1.p locus=Potri.018G066400 ID=Potri.018G066400.1.v4.1 annot-version=v4.1
ATGGATGGACCCATCTTCGTAATTGAAGCATCCGAAGCCGAATCGATGGCTAAACAATCAGGCCTCACAGTCCTCCAGCTCCTCCCTACCCTAGTCAAAT
CAGCGCAGGCCTTGGCTCGCCCGCCAATCTCCAAGTACCACGTGGGCGCCGTCGGTCTCGGATCCTCCGGCCGCATCTTCTTGGGTGGCAACATCGAATT
CCCGGGCCTCCCTCTCCATCATTCTGTCCACGCCGAACAATTCCTCATTACCAATCTCACTCTCAATGCGGAGCCCTCCCTAAAATACGTTGCTGTATCC
GCCGCCCCTTGTGGCCACTGCCGTCAATTCTTTCAGGAAATCCGCCACGCCCCTGATATACATATCCTCATCACGGGTGATAGTAATAGTAACCACAATT
ACAAGAATGATTTAGCAAATGAAGAACAATTTGAGCCCATGTCTTGTCTTTTACCGCACAGGTTCGGACCTGATGATCTTTTGGGTAAGGATGTTCCCTT
GCTTTTGGAGCCCCATCATAATAACTTGTCGTTTCTAGGTGATGACAAGTTACCATATGGTGTTAGTGCTGCTTTGGAAGATCTGAAAAATGAGGCTTTG
GAAGCTGCCAAAAAGTCTCATGCACCCTATACTAATTGCCCATCAGGGTTGGCCTTGATGGATTGTGAAGGGAAGGTGTTTAGAGGATCATATATGGAGT
CTGCCGCCTATAATCCCAGCATGGGCCCGGTGCAGGCGGCTTTGGTGGCATATGTGATGGGAGGGAGGGGTGGTGGCTTTGACAGGATTGTTGCTGCTGC
GTTGGTGGAGAAGCAAGGGGCTCAGGCGAGACAGGAGCAGACGGCGAGATTGATTTTGAAGGAAATATCGCCAAAGTGTGAGTTTCTGGTGTTTCATTGT
GTTTCCAATTCCGGTTCCAGTCCCAGTTTCAACAATTTGAATTGA
AA sequence
>Potri.018G066400.1 pacid=42800893 polypeptide=Potri.018G066400.1.p locus=Potri.018G066400 ID=Potri.018G066400.1.v4.1 annot-version=v4.1
MDGPIFVIEASEAESMAKQSGLTVLQLLPTLVKSAQALARPPISKYHVGAVGLGSSGRIFLGGNIEFPGLPLHHSVHAEQFLITNLTLNAEPSLKYVAVS
AAPCGHCRQFFQEIRHAPDIHILITGDSNSNHNYKNDLANEEQFEPMSCLLPHRFGPDDLLGKDVPLLLEPHHNNLSFLGDDKLPYGVSAALEDLKNEAL
EAAKKSHAPYTNCPSGLALMDCEGKVFRGSYMESAAYNPSMGPVQAALVAYVMGGRGGGFDRIVAAALVEKQGAQARQEQTARLILKEISPKCEFLVFHC
VSNSGSSPSFNNLN

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G19570 DESZ, AT-CDA1, ... cytidine deaminase 1 (.1) Potri.018G066400
[exp]
0 1 CDA1.2
AT1G69500 CYP704B1 "cytochrome P450, family 704, ... Potri.008G088900
[exp]
3.87 0.8533 CYP704B3
AT1G14600 GARP Homeodomain-like superfamily p... Potri.010G099600
[exp]
5.47 0.8766
AT5G05340 Peroxidase superfamily protein... Potri.013G156500
[exp]
6.48 0.8522 Pt-PRX1.15
AT1G28480 roxy19, GRX480 Thioredoxin superfamily protei... Potri.004G049800
[exp]
6.78 0.8920 Pt-GRX.2
AT4G18910 ATNLM2, NIP1;2,... NOD26-LIKE INTRINSIC PROTEIN 2... Potri.011G072100
[exp]
8.54 0.7814
AT4G08290 nodulin MtN21 /EamA-like trans... Potri.005G176100
[exp]
11.31 0.8053
Potri.017G153100
[exp]
11.48 0.7985
AT3G26300 CYP71B34 "cytochrome P450, family 71, s... Potri.007G084800
[exp]
16.97 0.8414 IFS1.47,CYP736A4v1
AT5G20250 RS6, DIN10 raffinose synthase 6, DARK IND... Potri.006G065700
[exp]
20.78 0.8167
AT2G15490 UGT73B4 UDP-glycosyltransferase 73B4 (... Potri.006G047200
[exp]
22.18 0.7786 ZOG1.16

Potri.018G066400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.