Plant FIBer expression Database

Potri.018G066600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G29680 678 / 0 Alkaline-phosphatase-like family protein (.1)
AT4G29690 551 / 0 Alkaline-phosphatase-like family protein (.1)
AT4G29700 528 / 0 Alkaline-phosphatase-like family protein (.1)
AT4G29710 179 / 2e-54 Alkaline-phosphatase-like family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G150900
[exp]
813 / 0 AT4G29680 703 / 0.0 Alkaline-phosphatase-like family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10032681
[exp]
690 / 0 AT4G29680 699 / 0.0 Alkaline-phosphatase-like family protein (.1)
Lus10008562
[exp]
689 / 0 AT4G29680 699 / 0.0 Alkaline-phosphatase-like family protein (.1)
Lus10034660
[exp]
563 / 0 AT4G29680 558 / 0.0 Alkaline-phosphatase-like family protein (.1)
Lus10007981
[exp]
519 / 0 AT4G29680 526 / 0.0 Alkaline-phosphatase-like family protein (.1)
Lus10017872
[exp]
235 / 3e-75 AT4G29680 243 / 6e-79 Alkaline-phosphatase-like family protein (.1)
Lus10000041
[exp]
203 / 1e-63 AT4G29700 204 / 2e-64 Alkaline-phosphatase-like family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0088 Alk_phosphatase PF01663 Phosphodiest Type I phosphodiesterase / nucleotide pyrophosphatase
Representative CDS sequence
>Potri.018G066600.1 pacid=42800730 polypeptide=Potri.018G066600.1.p locus=Potri.018G066600 ID=Potri.018G066600.1.v4.1 annot-version=v4.1
ATGGGTTCTGATTCAGTTTCCACATCAACGAAGCCACCACAAGAAGGAGACCCATCTGCTTCTCTTCTTTCTTTCAACGCAGGCTCCCTCTCTTATCCTT
CAAATCCACACCAAAAGAACACTGCCAACTCCGTCATTTTCACCTCTCTTATCCTTGTCACTTGCATCGCTCTCTCTGCTGCTTCTGCTTTTGCCTTTCT
CTTTTTTTCCTCTTCTTCTGTTCCTCTTACGGATACCTCGTCCGCTTCTCTACAGTCGACGTCGCGTTCTTTGACCAAGCTCAACCACCCTGTCGTTCTC
TTGATTTCATCTGACGGGTTCAGGTTTGGTTACCAGTTCAAGACCCATACACCAAATATTCATCGTCTGATTGTTAACGGGACTGAAGCTGAAACTGGTT
TGATTCCTGTTTTCCCTACTCTTACTTTCCCTAATCACTACTCTATTGTTACTGGCCTTTACCCTGCTCATCATGGTATTATTAACAATTATTTTGATGA
TCCAAAAACTGGAGAGGTTTTCACAATGGCAAGTCATGAGCCTAAGTGGTGGCTTGGTGAACCACTTTGGGAGACAGTGGCTAATCATGGTTTGAAGGCA
GCCACTTATTTTTGGCCTGGTTCTGAGGTGCATAAAGGATCTTGGACTTGCCCTCCTGGTTTTTGTATGTTTTATAATGGTTCTGTTCCTTTTGATGAAC
GTGTAGATACTGTTTTGAGTTATTTTGATTTGCCAGCTAGTGAGATTCCTGTGTTTATGACCTTGTATTTTGAGGATCCTGATCATCAGGGTCATAATGT
GGGACCTGATGGTCCGGAGATTACTGAGGCTGTTGCTGGGATTGATAGGATGATTGGCAAGCTGATTGATGGATTAGAGAAAAGAGGGGTTTTTGAGGAT
GTCACTATAATTATGGTTGGTGATCATGGAATGGTTGGTACATGTGATAAAAAGTTGATATTTTTGGATGATTTGGCGCCTTGGATCGATATCCCAGCTG
ACTGGGTTAGGTCCTATACTCCTTTGCTTGCAATTCGTCCACCTCCTGGTTTTGCACCGTCTGATGTTGTTGCAAAGATGAATGAAGGGTTGCAGTCGGG
GAAGGTTCAAAATGGAAAGAATTTGAAGATGTATCTCAAGGAGAAGCTGCCCTCTAGGCTTCATTATGCAGCAAGTGCCAGGATTCCACCAATAATAGGG
ATGCTTGATGAGGGTTTTAAGGTGGAGCAGAAGAGAACTGAGGGGCAAGAGTGTGGAGGAGCACATGGTTATGACAATGCACTTTTCTCCATGAGGACAA
TTTTCGTTGGCCATGGTCCTCAGTTTGCAAGGGGGCAAAAAGTGCCATCTTTTGAGAATGTCCAGATATACAACTTGGTTACTTCGATTCTCAATATCCA
GGGTGCTCCCAATAATGGGTCTGTGTCTTTTCCATCAACTGTTCTTTTGCCCAATCCTCATAAATTCTAA
AA sequence
>Potri.018G066600.1 pacid=42800730 polypeptide=Potri.018G066600.1.p locus=Potri.018G066600 ID=Potri.018G066600.1.v4.1 annot-version=v4.1
MGSDSVSTSTKPPQEGDPSASLLSFNAGSLSYPSNPHQKNTANSVIFTSLILVTCIALSAASAFAFLFFSSSSVPLTDTSSASLQSTSRSLTKLNHPVVL
LISSDGFRFGYQFKTHTPNIHRLIVNGTEAETGLIPVFPTLTFPNHYSIVTGLYPAHHGIINNYFDDPKTGEVFTMASHEPKWWLGEPLWETVANHGLKA
ATYFWPGSEVHKGSWTCPPGFCMFYNGSVPFDERVDTVLSYFDLPASEIPVFMTLYFEDPDHQGHNVGPDGPEITEAVAGIDRMIGKLIDGLEKRGVFED
VTIIMVGDHGMVGTCDKKLIFLDDLAPWIDIPADWVRSYTPLLAIRPPPGFAPSDVVAKMNEGLQSGKVQNGKNLKMYLKEKLPSRLHYAASARIPPIIG
MLDEGFKVEQKRTEGQECGGAHGYDNALFSMRTIFVGHGPQFARGQKVPSFENVQIYNLVTSILNIQGAPNNGSVSFPSTVLLPNPHKF

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G29680 Alkaline-phosphatase-like fami... Potri.018G066600
[exp]
0 1
AT5G23950 Calcium-dependent lipid-bindin... Potri.012G144600
[exp]
1.41 0.8008
AT3G21300 RNA methyltransferase family p... Potri.001G194701
[exp]
6.92 0.7623
AT5G13640 PDAT1, ATPDAT PHOSPHOLIPID:DIACYLGLYCEROL AC... Potri.001G171000
[exp]
12.60 0.7789 Pt-ATPDAT.2
AT2G17480 ATMLO8, MLO8 MILDEW RESISTANCE LOCUS O 8, S... Potri.005G099200
[exp]
13.41 0.7189
AT2G15290 ATTIC21, TIC21,... PERMEASE IN CHLOROPLASTS 1, CH... Potri.009G096300
[exp]
13.71 0.7995
AT5G04190 PKS4 phytochrome kinase substrate 4... Potri.005G090000
[exp]
14.83 0.7303
AT5G64300 ATGCH, ATRIBA1,... RED FLUORESCENT IN DARKNESS 1,... Potri.007G097300
[exp]
20.29 0.7788
AT1G78560 Sodium Bile acid symporter fam... Potri.011G103200
[exp]
22.44 0.7209
AT1G26320 Zinc-binding dehydrogenase fam... Potri.017G002300
[exp]
23.23 0.7735
AT1G43850 SEU SEUSS transcriptional co-regul... Potri.005G058501
[exp]
29.49 0.7191

Potri.018G066600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.