Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13650 590 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G27610 583 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G16480 575 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT5G09950 571 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G33170 566 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G57430 557 / 0 OTP84 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G33990 555 / 0 EMB2758 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G39530 548 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G02010 545 / 3e-180 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G11290 544 / 4e-180 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G047800 [exp] 684 / 0 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G058900 [exp] 639 / 0 AT4G13650 1282 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.015G047600 [exp] 617 / 0 AT1G18485 1077 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.015G018700 [exp] 609 / 0 AT3G49170 1040 / 0.0 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G129100 [exp] 608 / 0 AT5G09950 1287 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G184800 [exp] 598 / 0 AT2G27610 1061 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G215500 [exp] 590 / 0 AT3G63370 922 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G155100 [exp] 582 / 0 AT3G61170 933 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G164900 [exp] 576 / 0 AT5G13230 950 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017082 [exp] 1150 / 0 AT1G16480 507 / 3e-165 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10037799 [exp] 938 / 0 AT1G68930 473 / 1e-157 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10013991 [exp] 691 / 0 AT3G57430 632 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015414 [exp] 682 / 0 AT3G57430 629 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018978 [exp] 621 / 0 AT4G13650 1258 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10004081 [exp] 602 / 0 AT3G63370 893 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014707 [exp] 598 / 0 AT3G63370 893 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10004892 [exp] 591 / 0 AT2G27610 998 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10035164 [exp] 570 / 0 AT3G02010 962 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013578 [exp] 569 / 0 AT1G16480 1036 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family CL0109 [poplar] [flax] CDA PF14432 [poplar] [flax] DYW_deaminase DYW family of nucleic acid deaminases
Representative CDS sequence Show only first row Show all	>Potri.018G067500.1 pacid=42801805 polypeptide=Potri.018G067500.1.p locus=Potri.018G067500 ID=Potri.018G067500.1.v4.1 annot-version=v4.1 ATGCATCTGACAGCGGCCAAAAACATACTTTGCAACAAGGCCATCTACGACTCTCTAGTGTTCAAATTCATGGAATGCGACTTCATTACCCTGAAAATGC GCTCCCCATCACTAAATTATCGATTCTGCCCTAGACATACTTCTTCTATGAAGTTACCCAACAAGCCCCGTTCAAGTTCAACTTCATTGTTGCTTTCTTT AGGGTCAAATTTTTCCGTTTCTGCTGCCGCTCTCAGTACTATTGAACCCAGCCCCACAAGAGATTTCAATCCCACGAATCTTCAAAACTCGCCGGCTCAC CTCCCTGAGGCTAATACAAAGATATCCAGAAAGTTTTGGAGTCCGAATTTGCCTAATCTAAATGGTAAAAGTGAAAGTAACGTAACCAGTAGCCCTGTGA GGTTTGATGCAAAGGAGAGGCTAAAACGATATTCTGTTATGCTGCGTGAGTGTGCTTCAAAAGGGGATGTAAAAGAGGGGAAGGCTATTCATGGGAACTT GATTACAAGTGGAGTGGAGCTAGATTCACATTTGTGGGTTTCTTTGATTAATTTCTACGCAAAATGTAGGAGCCGATTCTTTGCACGCAAGGTGCTTGCT GAAATGCCCCAGCGAGACGTTGTATCATGGACTGCGCTGATTTCTGGATTTGTGAATGAAGGCTGTGGAAGTGAGAGCGTTAGTCTATATTGCGAAATGA GAAAGGAGAATGTAAGGGCCAATGAGTTTGCATTGGCTACTGCATTGAAAGCTTGCTCTATGTGCTTGAATTTAGAGTTTGGAAAGCAGGTCCACGTGGA AGCAATTAAAGCTGGATTGCTATTGGATTTGTTTGTCGGGTCTGCGCTTGTTGACCTTTATGCTAGATGTGGAGAGATGGAACTTGCTGAAAGGTTGTTC TTTGGCATGCCTGAGAAGAATGGCGTGTCGTGGAATGCTCTGCTCAATGGTTATGCTCAACTGGGCGATGGGAAGAAGGTTTTGAAGTTGTTCTGTAAAA TGAAAGAGTGTGAAACAAAGTTTAGTAAATTTACTTTGTCTACTGTCTTAAAAGGCTGTGCTAACACAGGGAGTTTAAGAGAAGGCAAAGTACTGCATGC TCTGGCACTCAGAAGTGGGTGTGAGATTGATGAATTTCTGGGTTGCAGTCTTGTTGATATGTATTCAAAGTGTGGGACGGTTTATGATGCATTAAAAGTG TTTACAAAGATAAGAAATCCTGATGTAGTGGCCTGGAGTGCGATGATCACTGGCCTTGATCAGCAAGGCCATGGCCAAGAAGCGGCTGAGTTATTTCATC TGATGAGACGTAAAGGAGCTAGACCTAACCAATTTACCCTTTCTAGTCTTGTTAGCACGGCTACTAATATGGGTGACCTGCGTTATGGTCAAAGCATTCA TGGTTGTATATGCAAATACGGGTTTGAATCTGATAATTTAGTCAGCAATCCATTGATCATGATGTACATGAAAAGCAGGTGTGTGGAAGATGGTAACAAG GTGTTTGAGGCAATGACCAATCCAGATTTAGTTTCTTGGAATGCCCTTTTATCTGGATTCTATGACTCACAGACTTGCGGTAGAGGACCAAGAATCTTCT ACCAGATGCTCTTGGAAGGTTTCAAGCCTAATATGTTCACATTTATTAGTGTTTTAAGGTCTTGTTCTAGTCTGTTGGATCCAGAGTTTGGAAAGCAAGT ACATGCTCATATCATAAAAAACAGCAGTGATGATGATGACTTTGTTGGGACAGCTCTTGTTGACATGTACGCAAAGGCCAGATGCTTGGAAGATGCAGGT GTAGCTTTTGATAGATTGGTTAATCGGGACATTTTCTCTTGGACAGTCATTATTTCTGGTTATGCACAAACTGATCAAGCAGAAAAGGCTGTTAAGTATT TTCGTCAAATGCAAAGAGAGGGTATAAAGCCAAATGAATACACTCTTGCCAGCTGTTTAAGTGGATGTTCCCATATGGCAACCTTGGAAAATGGGCGGCA ACTCCACGCTGTGGCAGTTAAGGCTGGGCATTTTGGTGATATATTTGTTGGTAGTGCACTGGTCGATTTGTATGGGAAATGCGGTTGCATGGAACATGCC GAGGCAATTTTTAAAGGCTTGATTTCACGGGATATAGTCTCATGGAACACTATCATATCTGGGTACTCGCAACATGGTCAGGGGGAGAAGGCTCTTGAAG CCTTTAGGATGATGTTATCTGAAGGAATTATGCCTGATGAGGCCACTTTCATTGGTGTTCTTTCTGCTTGCAGTTTCATGGGTTTGGTTGAAGAGGGGAA AAAGCGTTTTGACTCGATGAGTAAAATATATGGGATTAACCCTTCAATTGAGCATTATGCTTGCATGGTTGATATTCTTGGCCGAGCTGGAAAATTCAAT GAGGTCAAGATCTTTATTGAGGAAATGAACCTAACCCCCTATTCCCTGATCTGGGAGACTGTTCTTGGGGCTTGCAAATTGCATGGAAATGTTGACTTTG GTGAAAAAGCTGCTAAGAAACTATTTGAAATGGAACCCATGATGGACTCCAGTTATATATTGCTATCAAACATTTTTGCAAGCAAAGGCAGGTGGGATGA TGTAAGAAACATCAGAGCATTGATGACCTCGCGAGGCATTAAAAAAGAACCTGGGTGTAGCTGGGTAGAAGTTGATGGTCAAGTTCACGTCTTCTTGTCT CAAGATGGTTCACACCCCAAAATCAGAGAAATTTATGCCAAATTGGACAAGTTGGGGCAAAGTCTGATGTCAATAGGTTATGTGCCAAAAACAGAAGTTG TTCTTCATAATGTCTCTAACAAAGAAAAAATGGAGCATCTCTACTATCACAGTGAAAGATTGGCTCTTTCCTTTGCTCTTCTAAGCACCAATGCAGTGAA ACCAATTCGGATTTTCAAAAATCTAAGAATCTGTGAGGATTGCCATGATTTTATGAAGCTTATCTCTGACATCACAAATCAGGAAATAGTTGTCCGTGAC ATTAGACGGTTCCACCATTTTAAGAGAGGCACCTGCTCTTGTCAGGATCGTTGGTAA
AA sequence Show only first row Show all	>Potri.018G067500.1 pacid=42801805 polypeptide=Potri.018G067500.1.p locus=Potri.018G067500 ID=Potri.018G067500.1.v4.1 annot-version=v4.1 MHLTAAKNILCNKAIYDSLVFKFMECDFITLKMRSPSLNYRFCPRHTSSMKLPNKPRSSSTSLLLSLGSNFSVSAAALSTIEPSPTRDFNPTNLQNSPAH LPEANTKISRKFWSPNLPNLNGKSESNVTSSPVRFDAKERLKRYSVMLRECASKGDVKEGKAIHGNLITSGVELDSHLWVSLINFYAKCRSRFFARKVLA EMPQRDVVSWTALISGFVNEGCGSESVSLYCEMRKENVRANEFALATALKACSMCLNLEFGKQVHVEAIKAGLLLDLFVGSALVDLYARCGEMELAERLF FGMPEKNGVSWNALLNGYAQLGDGKKVLKLFCKMKECETKFSKFTLSTVLKGCANTGSLREGKVLHALALRSGCEIDEFLGCSLVDMYSKCGTVYDALKV FTKIRNPDVVAWSAMITGLDQQGHGQEAAELFHLMRRKGARPNQFTLSSLVSTATNMGDLRYGQSIHGCICKYGFESDNLVSNPLIMMYMKSRCVEDGNK VFEAMTNPDLVSWNALLSGFYDSQTCGRGPRIFYQMLLEGFKPNMFTFISVLRSCSSLLDPEFGKQVHAHIIKNSSDDDDFVGTALVDMYAKARCLEDAG VAFDRLVNRDIFSWTVIISGYAQTDQAEKAVKYFRQMQREGIKPNEYTLASCLSGCSHMATLENGRQLHAVAVKAGHFGDIFVGSALVDLYGKCGCMEHA EAIFKGLISRDIVSWNTIISGYSQHGQGEKALEAFRMMLSEGIMPDEATFIGVLSACSFMGLVEEGKKRFDSMSKIYGINPSIEHYACMVDILGRAGKFN EVKIFIEEMNLTPYSLIWETVLGACKLHGNVDFGEKAAKKLFEMEPMMDSSYILLSNIFASKGRWDDVRNIRALMTSRGIKKEPGCSWVEVDGQVHVFLS QDGSHPKIREIYAKLDKLGQSLMSIGYVPKTEVVLHNVSNKEKMEHLYYHSERLALSFALLSTNAVKPIRIFKNLRICEDCHDFMKLISDITNQEIVVRD IRRFHHFKRGTCSCQDRW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G13650			Pentatricopeptide repeat (PPR)...		Potri.018G067500 [exp]	0	1
AT3G06430		AtPPR2, EMB2750	pentatricopeptide repeat 2, em...		Potri.008G098700 [exp]	1.00	0.9624
AT5G37930			Protein with RING/U-box and TR...		Potri.004G072800 [exp]	3.00	0.9539
AT1G63680		APG13, ATMURE, ...	PIGMENT DEFECTIVE EMBRYO 316, ...		Potri.001G103300 [exp]	4.89	0.9609	Pt-PDE316.1
AT4G18750		DOT4	DEFECTIVELY ORGANIZED TRIBUTAR...		Potri.004G059400 [exp]	6.70	0.9421
AT5G11480			P-loop containing nucleoside t...		Potri.018G037000 [exp]	10.48	0.9336
AT4G01037		AtWTF1	what's this factor?, Ubiquitin...		Potri.014G096800 [exp]	12.64	0.9477
AT4G35130			Tetratricopeptide repeat (TPR)...		Potri.004G178200 [exp]	13.26	0.9417
AT1G15510		VAC1, ATECB2	VANILLA CREAM 1, ARABIDOPSIS E...		Potri.003G058700 [exp]	13.41	0.9441
AT3G06430		AtPPR2, EMB2750	pentatricopeptide repeat 2, em...		Potri.010G153900 [exp]	14.31	0.9499
AT4G01037		AtWTF1	what's this factor?, Ubiquitin...		Potri.002G169300 [exp]	15.36	0.9515

Compare expression of checked genes

Potri.018G067500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.